Analysis of interatomic Contacts of Structural Units in PDB entry:
1QT1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QT1 entry

There are 2 chains in PDB entry 1QT1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1GLY 387
B
 SER 501GLY 887
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 1QT1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 8Right-handed 310
Helix 2
2
A
14 17Right-handed alpha
Helix 3
3
A
35 45Right-handed alpha
Helix 4
4
A
54 57Right-handed alpha
Helix 5
5
A
64 81Right-handed alpha
Helix 6
6
A
96 98Right-handed 310
Helix 7
7
A
108 128Right-handed alpha
Helix 8
8
A
150 171Right-handed alpha
Helix 9
9
A
195 204Right-handed alpha
Helix 10
10
A
208 210Right-handed 310
Helix 11
11
A
217 223Right-handed alpha
Helix 12
12
A
227 236Right-handed alpha
Helix 13
13
A
264 277Right-handed alpha
Helix 14
14
A
295 321Right-handed alpha
Helix 15
15
A
323 331Right-handed alpha
Helix 16
16
A
334 338Right-handed alpha
Helix 17
17
A
346 351Right-handed alpha
Helix 18
18
A
353 355Right-handed 310
Helix 19
19
A
361 366Right-handed alpha
Helix 20
20
A
371 383Right-handed alpha
Helix 21
21
B
506 508Right-handed 310
Helix 22
22
B
514 517Right-handed alpha
Helix 23
23
B
535 545Right-handed alpha
Helix 24
24
B
554 557Right-handed alpha
Helix 25
25
B
564 581Right-handed alpha
Helix 26
26
B
596 598Right-handed 310
Helix 27
27
B
608 627Right-handed alpha
Helix 28
28
B
645 647Right-handed 310
Helix 29
29
B
650 671Right-handed alpha
Helix 30
30
B
695 704Right-handed alpha
Helix 31
31
B
708 710Right-handed 310
Helix 32
32
B
717 723Right-handed alpha
Helix 33
33
B
727 737Right-handed alpha
Helix 34
34
B
764 777Right-handed alpha
Helix 35
35
B
795 821Right-handed alpha
Helix 36
36
B
823 831Right-handed alpha
Helix 37
37
B
834 838Right-handed alpha
Helix 38
38
B
846 851Right-handed alpha
Helix 39
39
B
853 855Right-handed 310
Helix 40
40
B
861 866Right-handed alpha
Helix 41
41
B
871 882Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1QT1. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 285first strand
Strand 2
A
10 13parallel
Strand 3
A
49 53parallel
Strand 4
A
87 89parallel
Strand 5
A
132 135parallel
Strand 6
A
176 179parallel
Strand 7
A
211 216parallel
Strand 8
A
240 244parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
783 785first strand
Strand 2
B
510 513parallel
Strand 3
B
549 553parallel
Strand 4
B
587 589parallel
Strand 5
B
632 635parallel
Strand 6
B
676 679parallel
Strand 7
B
711 716parallel
Strand 8
B
740 744parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il