Analysis of interatomic Contacts of Structural Units in PDB entry:
1QTM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QTM entry

There are 3 chains in PDB entry 1QTM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 G 101 C 111
C
 A 203 C 216
A
 ALA 293LYS 831
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 1QTM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
337 343Right-handed alpha
Helix 2
2
A
352 363Right-handed alpha
Helix 3
3
A
372 381Right-handed alpha
Helix 4
4
A
386 395Right-handed alpha
Helix 5
5
A
401 420Right-handed alpha
Helix 6
6
A
423 433Right-handed alpha
Helix 7
7
A
433 448Right-handed alpha
Helix 8
8
A
452 479Right-handed alpha
Helix 9
9
A
486 496Right-handed alpha
Helix 10
10
A
515 522Right-handed alpha
Helix 11
11
A
527 545Right-handed alpha
Helix 12
12
A
548 552Right-handed 310
Helix 13
13
A
588 596Right-handed alpha
Helix 14
14
A
613 624Right-handed alpha
Helix 15
15
A
625 634Right-handed alpha
Helix 16
16
A
637 648Right-handed alpha
Helix 17
17
A
650 654Right-handed 310
Helix 18
18
A
655 671Right-handed alpha
Helix 19
19
A
674 683Right-handed alpha
Helix 20
20
A
685 700Right-handed alpha
Helix 21
21
A
700 718Right-handed alpha
Helix 22
22
A
731 735Right-handed 310
Helix 23
23
A
737 775Right-handed alpha
Helix 24
24
A
795 809Right-handed alpha
Helix 25
25
A
826 831Right-handed alpha
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There are 5 sheets in PDB entry 1QTM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 298first strand
Strand 2
A
331 334parallel
Strand 3
A
321 328anti-parallel
Strand 4
A
306 311anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
559 560first strand
Strand 2
A
449 451anti-parallel
Strand 3
A
598 599anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
563 565first strand
Strand 2
A
575 577anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
778 782first strand
Strand 2
A
786 792anti-parallel
Strand 3
A
604 611anti-parallel
Strand 4
A
819 824anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
719 721first strand
Strand 2
A
727 729anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il