Analysis of interatomic Contacts of Structural Units in PDB entry:
1QUV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QUV entry

There is 1 chain in PDB entry 1QUV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1SER 556
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 1QUV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 52Right-handed alpha
Helix 2
2
A
62 75Right-handed alpha
Helix 3
3
A
85 91Right-handed alpha
Helix 4
4
A
105 109Right-handed alpha
Helix 5
5
A
113 128Right-handed alpha
Helix 6
6
A
166 188Right-handed alpha
Helix 7
7
A
197 209Right-handed alpha
Helix 8
8
A
230 240Right-handed alpha
Helix 9
9
A
247 260Right-handed alpha
Helix 10
10
A
287 304Right-handed alpha
Helix 11
11
A
329 345Right-handed alpha
Helix 12
12
A
389 396Right-handed alpha
Helix 13
13
A
408 416Right-handed alpha
Helix 14
14
A
419 433Right-handed alpha
Helix 15
15
A
460 468Right-handed alpha
Helix 16
16
A
479 489Right-handed alpha
Helix 17
17
A
497 512Right-handed alpha
Helix 18
18
A
517 529Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 1QUV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 142first strand
Strand 2
A
157 162anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 223first strand
Strand 2
A
318 324anti-parallel
Strand 3
A
310 317anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 269first strand
Strand 2
A
273 277anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 373first strand
Strand 2
A
380 384anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 446first strand
Strand 2
A
451 454anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il