Analysis of interatomic Contacts of Structural Units in PDB entry:
1QVB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QVB entry

There are 2 chains in PDB entry 1QVB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 481
B
 MET 1GLN 481
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 1QVB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 19Right-handed alpha
Helix 2
2
A
30 38Right-handed alpha
Helix 3
3
A
38 44Right-handed alpha
Helix 4
4
A
51 55Right-handed 310
Helix 5
5
A
57 62Right-handed alpha
Helix 6
6
A
61 72Right-handed alpha
Helix 7
7
A
82 87Right-handed alpha
Helix 8
8
A
112 123Right-handed alpha
Helix 9
9
A
124 140Right-handed alpha
Helix 10
10
A
160 168Right-handed alpha
Helix 11
11
A
169 172Right-handed 310
Helix 12
12
A
175 178Right-handed 310
Helix 13
13
A
179 197Right-handed alpha
Helix 14
14
A
208 218Right-handed alpha
Helix 15
15
A
219 223Right-handed 310
Helix 16
16
A
230 256Right-handed alpha
Helix 17
17
A
277 287Right-handed alpha
Helix 18
18
A
292 297Right-handed alpha
Helix 19
19
A
339 343Right-handed 310
Helix 20
20
A
364 379Right-handed alpha
Helix 21
21
A
396 414Right-handed alpha
Helix 22
22
A
431 435Right-handed 310
Helix 23
23
A
455 468Right-handed alpha
Helix 24
24
A
471 479Right-handed 310
Helix 25
25
B
14 19Right-handed alpha
Helix 26
26
B
30 38Right-handed alpha
Helix 27
27
B
38 44Right-handed alpha
Helix 28
28
B
51 55Right-handed 310
Helix 29
29
B
57 62Right-handed alpha
Helix 30
30
B
61 72Right-handed alpha
Helix 31
31
B
82 87Right-handed alpha
Helix 32
32
B
112 123Right-handed alpha
Helix 33
33
B
124 140Right-handed alpha
Helix 34
34
B
160 168Right-handed alpha
Helix 35
35
B
169 172Right-handed 310
Helix 36
36
B
175 178Right-handed 310
Helix 37
37
B
179 197Right-handed alpha
Helix 38
38
B
208 218Right-handed alpha
Helix 39
39
B
219 223Right-handed 310
Helix 40
40
B
230 256Right-handed alpha
Helix 41
41
B
277 287Right-handed alpha
Helix 42
42
B
292 297Right-handed alpha
Helix 43
43
B
339 343Right-handed 310
Helix 44
44
B
364 379Right-handed alpha
Helix 45
45
B
396 414Right-handed alpha
Helix 46
46
B
431 435Right-handed 310
Helix 47
47
B
455 468Right-handed alpha
Helix 48
48
B
471 479Right-handed 310
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There are 8 sheets in PDB entry 1QVB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
76 80parallel
Strand 3
A
8 12parallel
Strand 4
A
418 424parallel
Strand 5
A
381 386parallel
Strand 6
A
315 319parallel
Strand 7
A
260 265parallel
Strand 8
A
202 207parallel
Strand 9
A
144 148parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 100first strand
Strand 2
A
106 109anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 270first strand
Strand 2
A
323 327parallel
Strand 3
A
334 335anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 446first strand
Strand 2
A
451 454anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 12first strand
Strand 2
B
76 80parallel
Strand 3
B
8 12parallel
Strand 4
B
418 424parallel
Strand 5
B
381 386parallel
Strand 6
B
315 319parallel
Strand 7
B
260 265parallel
Strand 8
B
202 207parallel
Strand 9
B
144 148parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 100first strand
Strand 2
B
106 109anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 270first strand
Strand 2
B
323 327parallel
Strand 3
B
334 335anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
443 446first strand
Strand 2
B
451 454anti-parallel
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