Analysis of interatomic Contacts of Structural Units in PDB entry:
1QVC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QVC entry

There are 4 chains in PDB entry 1QVC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ASN 145
B
 ALA 201GLY 344
C
 ALA 401GLY 544
D
 ALA 601GLN 740
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 1QVC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
61 71Right-handed alpha
Helix 2
2
B
261 271Right-handed alpha
Helix 3
3
C
461 471Right-handed alpha
Helix 4
4
D
661 671Right-handed alpha
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There are 2 sheets in PDB entry 1QVC. Click on sheet of interest to get list of strands forming it: A, B,

There are 20 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 14first strand
Strand 2
A
76 88anti-parallel
Strand 3
A
107 110anti-parallel
Strand 4
A
76 88anti-parallel
Strand 5
A
95 102anti-parallel
Strand 6
A
53 60parallel
Strand 7
A
29 36anti-parallel
Strand 8
A
19 21anti-parallel
Strand 9
A
29 36anti-parallel
Strand 10
A
5 14anti-parallel
Strand 11
B
205 214anti-parallel
Strand 12
B
227 236anti-parallel
Strand 13
B
219 223anti-parallel
Strand 14
B
227 236anti-parallel
Strand 15
B
253 260anti-parallel
Strand 16
B
294 302parallel
Strand 17
B
276 289anti-parallel
Strand 18
B
205 214anti-parallel
Strand 19
B
276 289anti-parallel
Strand 20
B
307 310anti-parallel
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There are 20 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
405 414first strand
Strand 2
C
429 440anti-parallel
Strand 3
C
419 421anti-parallel
Strand 4
C
429 440anti-parallel
Strand 5
C
449 460anti-parallel
Strand 6
C
494 502parallel
Strand 7
C
476 489anti-parallel
Strand 8
C
507 510anti-parallel
Strand 9
C
476 489anti-parallel
Strand 10
C
405 414anti-parallel
Strand 11
D
605 614anti-parallel
Strand 12
D
628 640anti-parallel
Strand 13
D
619 622anti-parallel
Strand 14
D
628 640anti-parallel
Strand 15
D
649 660anti-parallel
Strand 16
D
695 702parallel
Strand 17
D
676 688anti-parallel
Strand 18
D
605 614anti-parallel
Strand 19
D
676 688anti-parallel
Strand 20
D
707 710anti-parallel
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