Analysis of interatomic Contacts of Structural Units in PDB entry:
1QVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QVD entry

There are 2 chains in PDB entry 1QVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1TRP 696
B
 LEU 698GLY 704
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 1QVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 19Right-handed alpha
Helix 2
2
A
28 41Right-handed alpha
Helix 3
3
A
52 69Right-handed alpha
Helix 4
4
A
76 91Right-handed alpha
Helix 5
5
A
91 98Right-handed alpha
Helix 6
6
A
100 107Right-handed alpha
Helix 7
7
A
108 111Right-handed 310
Helix 8
8
A
113 117Right-handed 310
Helix 9
9
A
119 124Right-handed alpha
Helix 10
10
A
129 142Right-handed alpha
Helix 11
11
A
174 180Right-handed 310
Helix 12
12
A
181 183Right-handed 310
Helix 13
13
A
184 206Right-handed alpha
Helix 14
14
A
211 233Right-handed alpha
Helix 15
15
A
235 239Right-handed 310
Helix 16
16
A
241 246Right-handed alpha
Helix 17
17
A
251 258Right-handed alpha
Helix 18
18
A
268 278Right-handed alpha
Helix 19
19
A
279 281Right-handed 310
Helix 20
20
A
294 306Right-handed alpha
Helix 21
21
A
309 326Right-handed alpha
Helix 22
22
A
327 329Right-handed 310
Helix 23
23
A
330 336Right-handed alpha
Helix 24
24
A
337 346Right-handed alpha
Helix 25
25
A
352 365Right-handed alpha
Helix 26
26
A
365 378Right-handed alpha
Helix 27
27
A
381 404Right-handed alpha
Helix 28
28
A
408 422Right-handed alpha
Helix 29
29
A
430 435Right-handed alpha
Helix 30
30
A
435 443Right-handed alpha
Helix 31
31
A
452 470Right-handed alpha
Helix 32
32
A
504 506Right-handed 310
Helix 33
33
A
516 523Right-handed alpha
Helix 34
34
A
523 535Right-handed alpha
Helix 35
35
A
539 543Right-handed 310
Helix 36
36
A
554 574Right-handed alpha
Helix 37
37
A
577 581Right-handed 310
Helix 38
38
A
590 616Right-handed alpha
Helix 39
39
A
627 640Right-handed alpha
Helix 40
40
A
645 656Right-handed alpha
Helix 41
41
A
660 671Right-handed alpha
Helix 42
42
A
672 679Right-handed alpha
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There are 3 sheets in PDB entry 1QVD. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
642 644anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 154first strand
Strand 2
A
157 166anti-parallel
Strand 3
A
289 292parallel
Strand 4
A
248 250anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 427first strand
Strand 2
A
498 502parallel
Strand 3
A
490 493anti-parallel
Strand 4
B
700 703anti-parallel
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