Analysis of interatomic Contacts of Structural Units in PDB entry:
1QVR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1QVR entry

There are 3 chains in PDB entry 1QVR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 4	ALA 850
B	GLU 4	ALA 850
C	GLU 4	ALA 850

There are130 helices in PDB entry 1QVR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	7	24	Right-handed alpha
Helix 2	2	A	30	39	Right-handed alpha
Helix 3	3	A	44	52	Right-handed alpha
Helix 4	4	A	56	70	Right-handed alpha
Helix 5	5	A	75	79	Right-handed 310
Helix 6	6	A	84	100	Right-handed alpha
Helix 7	7	A	107	119	Right-handed alpha
Helix 8	8	A	124	133	Right-handed alpha
Helix 9	9	A	151	156	Right-handed alpha
Helix 10	10	A	160	166	Right-handed alpha
Helix 11	11	A	175	188	Right-handed alpha
Helix 12	12	A	203	218	Right-handed alpha
Helix 13	13	A	246	260	Right-handed alpha
Helix 14	14	A	291	297	Right-handed alpha
Helix 15	15	A	307	315	Right-handed alpha
Helix 16	16	A	333	352	Right-handed alpha
Helix 17	17	A	357	372	Right-handed alpha
Helix 18	18	A	377	395	Right-handed alpha
Helix 19	19	A	398	421	Right-handed alpha
Helix 20	20	A	425	430	Right-handed alpha
Helix 21	21	A	432	481	Right-handed alpha
Helix 22	22	A	485	494	Right-handed alpha
Helix 23	23	A	495	511	Right-handed alpha
Helix 24	24	A	522	532	Right-handed alpha
Helix 25	25	A	536	541	Right-handed alpha
Helix 26	26	A	544	551	Right-handed alpha
Helix 27	27	A	551	560	Right-handed alpha
Helix 28	28	A	563	578	Right-handed alpha
Helix 29	29	A	579	581	Right-handed 310
Helix 30	30	A	600	614	Right-handed alpha
Helix 31	31	A	615	617	Right-handed 310
Helix 32	32	A	630	636	Right-handed 310
Helix 33	33	A	651	659	Right-handed alpha
Helix 34	34	A	668	672	Right-handed 310
Helix 35	35	A	673	685	Right-handed alpha
Helix 36	36	A	711	721	Right-handed alpha
Helix 37	37	A	724	738	Right-handed alpha
Helix 38	38	A	741	747	Right-handed alpha
Helix 39	39	A	758	779	Right-handed alpha
Helix 40	40	A	787	799	Right-handed alpha
Helix 41	41	A	807	816	Right-handed alpha
Helix 42	42	A	816	827	Right-handed alpha
Helix 43	43	B	7	24	Right-handed alpha
Helix 44	44	B	30	39	Right-handed alpha
Helix 45	45	B	44	52	Right-handed alpha
Helix 46	46	B	56	70	Right-handed alpha
Helix 47	47	B	75	79	Right-handed 310
Helix 48	48	B	84	100	Right-handed alpha
Helix 49	49	B	107	119	Right-handed alpha
Helix 50	50	B	124	134	Right-handed alpha
Helix 51	51	B	151	156	Right-handed alpha
Helix 52	52	B	160	166	Right-handed alpha
Helix 53	53	B	175	186	Right-handed alpha
Helix 54	54	B	203	218	Right-handed alpha
Helix 55	55	B	246	260	Right-handed alpha
Helix 56	56	B	291	296	Right-handed alpha
Helix 57	57	B	307	313	Right-handed alpha
Helix 58	58	B	314	316	Right-handed 310
Helix 59	59	B	317	322	Right-handed alpha
Helix 60	60	B	333	352	Right-handed alpha
Helix 61	61	B	357	372	Right-handed alpha
Helix 62	62	B	376	397	Right-handed alpha
Helix 63	63	B	400	421	Right-handed alpha
Helix 64	64	B	429	440	Right-handed alpha
Helix 65	65	B	441	443	Right-handed 310
Helix 66	66	B	444	484	Right-handed alpha
Helix 67	67	B	485	494	Right-handed alpha
Helix 68	68	B	495	510	Right-handed alpha
Helix 69	69	B	522	532	Right-handed alpha
Helix 70	70	B	536	541	Right-handed alpha
Helix 71	71	B	544	551	Right-handed alpha
Helix 72	72	B	551	558	Right-handed alpha
Helix 73	73	B	563	578	Right-handed alpha
Helix 74	74	B	579	581	Right-handed 310
Helix 75	75	B	600	614	Right-handed alpha
Helix 76	76	B	615	617	Right-handed 310
Helix 77	77	B	630	636	Right-handed 310
Helix 78	78	B	651	659	Right-handed alpha
Helix 79	79	B	668	672	Right-handed 310
Helix 80	80	B	673	685	Right-handed alpha
Helix 81	81	B	711	721	Right-handed alpha
Helix 82	82	B	724	737	Right-handed alpha
Helix 83	83	B	741	747	Right-handed alpha
Helix 84	84	B	758	779	Right-handed alpha
Helix 85	85	B	787	799	Right-handed alpha
Helix 86	86	B	806	816	Right-handed alpha
Helix 87	87	B	816	826	Right-handed alpha
Helix 88	88	C	7	24	Right-handed alpha
Helix 89	89	C	30	39	Right-handed alpha
Helix 90	90	C	44	52	Right-handed alpha
Helix 91	91	C	56	70	Right-handed alpha
Helix 92	92	C	75	79	Right-handed 310
Helix 93	93	C	84	102	Right-handed alpha
Helix 94	94	C	107	118	Right-handed alpha
Helix 95	95	C	125	133	Right-handed alpha
Helix 96	96	C	151	156	Right-handed alpha
Helix 97	97	C	160	166	Right-handed alpha
Helix 98	98	C	175	188	Right-handed alpha
Helix 99	99	C	203	218	Right-handed alpha
Helix 100	100	C	246	260	Right-handed alpha
Helix 101	101	C	292	297	Right-handed alpha
Helix 102	102	C	307	315	Right-handed alpha
Helix 103	103	C	317	322	Right-handed alpha
Helix 104	104	C	333	352	Right-handed alpha
Helix 105	105	C	357	372	Right-handed alpha
Helix 106	106	C	376	395	Right-handed alpha
Helix 107	107	C	402	412	Right-handed alpha
Helix 108	108	C	415	423	Right-handed alpha
Helix 109	109	C	428	456	Right-handed alpha
Helix 110	110	C	457	481	Right-handed alpha
Helix 111	111	C	497	512	Right-handed alpha
Helix 112	112	C	522	532	Right-handed alpha
Helix 113	113	C	536	541	Right-handed alpha
Helix 114	114	C	544	551	Right-handed alpha
Helix 115	115	C	551	558	Right-handed alpha
Helix 116	116	C	563	578	Right-handed alpha
Helix 117	117	C	579	581	Right-handed 310
Helix 118	118	C	600	614	Right-handed alpha
Helix 119	119	C	615	617	Right-handed 310
Helix 120	120	C	631	636	Right-handed 310
Helix 121	121	C	651	659	Right-handed alpha
Helix 122	122	C	668	672	Right-handed 310
Helix 123	123	C	673	685	Right-handed alpha
Helix 124	124	C	711	721	Right-handed alpha
Helix 125	125	C	724	737	Right-handed alpha
Helix 126	126	C	741	747	Right-handed alpha
Helix 127	127	C	758	779	Right-handed alpha
Helix 128	128	C	787	799	Right-handed alpha
Helix 129	129	C	807	816	Right-handed alpha
Helix 130	130	C	816	827	Right-handed alpha

There are 18 sheets in PDB entry 1QVR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	29	first strand
Strand 2	A	82	83	parallel

Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	159	first strand
Strand 2	A	228	232	anti-parallel
Strand 3	A	265	269	parallel
Strand 4	A	302	306	parallel
Strand 5	A	195	198	parallel
Strand 6	A	327	329	parallel

Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	356	first strand
Strand 2	A	520	521	parallel

Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	589	593	first strand
Strand 2	A	702	707	parallel
Strand 3	A	662	666	parallel
Strand 4	A	619	622	parallel

Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	688	689	first strand
Strand 2	A	697	698	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	783	786	first strand
Strand 2	A	834	838	parallel
Strand 3	A	845	847	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	29	first strand
Strand 2	B	82	83	parallel

Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	159	first strand
Strand 2	B	228	232	anti-parallel
Strand 3	B	265	269	parallel
Strand 4	B	302	306	parallel
Strand 5	B	193	198	parallel
Strand 6	B	324	329	parallel

Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	356	first strand
Strand 2	B	520	521	parallel

Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	589	593	first strand
Strand 2	B	702	707	parallel
Strand 3	B	662	666	parallel
Strand 4	B	619	622	parallel

Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	688	689	first strand
Strand 2	B	697	698	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	783	786	first strand
Strand 2	B	834	839	parallel
Strand 3	B	844	847	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	29	first strand
Strand 2	C	82	83	parallel

Back to list of sheets
Back to top of page

There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	159	first strand
Strand 2	C	228	232	anti-parallel
Strand 3	C	265	269	parallel
Strand 4	C	302	306	parallel
Strand 5	C	193	198	parallel
Strand 6	C	324	329	parallel

Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	355	356	first strand
Strand 2	C	520	521	parallel

Back to list of sheets
Back to top of page

There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	589	593	first strand
Strand 2	C	702	707	parallel
Strand 3	C	662	666	parallel
Strand 4	C	619	622	parallel

Back to list of sheets
Back to top of page

There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	688	689	first strand
Strand 2	C	697	698	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	783	786	first strand
Strand 2	C	834	838	parallel
Strand 3	C	845	847	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1QVR

Analysis of interatomic Contacts of Structural Units in PDB entry:
1QVR