Analysis of interatomic Contacts of Structural Units in PDB entry:
1QWJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QWJ entry

There are 4 chains in PDB entry 1QWJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 40LYS 267
B
 PRO 40GLU 268
C
 PRO 40LYS 267
D
 PRO 40LYS 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 1QWJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
69 81Right-handed alpha
Helix 2
2
A
92 102Right-handed alpha
Helix 3
3
A
110 114Right-handed 310
Helix 4
4
A
119 129Right-handed alpha
Helix 5
5
A
148 161Right-handed alpha
Helix 6
6
A
220 225Right-handed alpha
Helix 7
7
A
239 243Right-handed 310
Helix 8
8
A
245 250Right-handed alpha
Helix 9
9
A
251 263Right-handed alpha
Helix 10
10
B
58 61Right-handed 310
Helix 11
11
B
69 81Right-handed alpha
Helix 12
12
B
92 102Right-handed alpha
Helix 13
13
B
119 129Right-handed alpha
Helix 14
14
B
148 162Right-handed alpha
Helix 15
15
B
201 205Right-handed 310
Helix 16
16
B
220 224Right-handed alpha
Helix 17
17
B
239 244Right-handed alpha
Helix 18
18
B
245 250Right-handed alpha
Helix 19
19
B
251 263Right-handed alpha
Helix 20
20
C
69 81Right-handed alpha
Helix 21
21
C
92 102Right-handed alpha
Helix 22
22
C
111 115Right-handed 310
Helix 23
23
C
119 130Right-handed alpha
Helix 24
24
C
148 161Right-handed alpha
Helix 25
25
C
220 224Right-handed alpha
Helix 26
26
C
239 243Right-handed 310
Helix 27
27
C
245 250Right-handed alpha
Helix 28
28
C
251 263Right-handed alpha
Helix 29
29
D
69 81Right-handed alpha
Helix 30
30
D
92 102Right-handed alpha
Helix 31
31
D
119 129Right-handed alpha
Helix 32
32
D
148 163Right-handed alpha
Helix 33
33
D
220 225Right-handed alpha
Helix 34
34
D
240 244Right-handed 310
Helix 35
35
D
245 250Right-handed alpha
Helix 36
36
D
251 263Right-handed alpha
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There are 11 sheets in PDB entry 1QWJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 108first strand
Strand 2
A
85 90parallel
Strand 3
A
43 48parallel
Strand 4
A
136 140parallel
Strand 5
A
208 219anti-parallel
Strand 6
A
166 173anti-parallel
Strand 7
A
233 237parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
67 68anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 178first strand
Strand 2
B
208 219anti-parallel
Strand 3
B
136 140anti-parallel
Strand 4
B
43 48parallel
Strand 5
B
85 90parallel
Strand 6
B
105 108parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 178first strand
Strand 2
B
208 219anti-parallel
Strand 3
B
166 173anti-parallel
Strand 4
B
233 237parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 64first strand
Strand 2
B
67 68anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 108first strand
Strand 2
C
85 90parallel
Strand 3
C
43 49parallel
Strand 4
C
136 140parallel
Strand 5
C
208 219anti-parallel
Strand 6
C
166 173anti-parallel
Strand 7
C
233 237parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 108first strand
Strand 2
C
85 90parallel
Strand 3
C
43 49parallel
Strand 4
C
136 140parallel
Strand 5
C
208 219anti-parallel
Strand 6
D
177 178anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 64first strand
Strand 2
C
67 68anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
177 178first strand
Strand 2
D
208 219anti-parallel
Strand 3
D
136 140anti-parallel
Strand 4
D
43 49parallel
Strand 5
D
85 90parallel
Strand 6
D
105 108parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
177 178first strand
Strand 2
D
208 219anti-parallel
Strand 3
D
166 173anti-parallel
Strand 4
D
233 237parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
63 64first strand
Strand 2
D
67 68anti-parallel
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