Analysis of interatomic Contacts of Structural Units in PDB entry:
1QYJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QYJ entry

There is 1 chain in PDB entry 1QYJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1LEU 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 1QYJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 54Right-handed 310
Helix 2
2
A
113 118Right-handed alpha
Helix 3
3
A
138 146Right-handed alpha
Helix 4
4
A
224 234Right-handed alpha
Helix 5
5
A
269 274Right-handed alpha
Helix 6
6
A
302 307Right-handed alpha
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There are 8 sheets in PDB entry 1QYJ. Click on sheet of interest to get list of strands forming it: M, AN, BN, DN, AC, BC, C, EC,

There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
A
166 171anti-parallel
Strand 3
A
153 158anti-parallel
Strand 4
A
310 314anti-parallel
Strand 5
A
318 323anti-parallel
Strand 6
A
183 187anti-parallel
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There are 4 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
20 22anti-parallel
Strand 3
A
91 93anti-parallel
Strand 4
A
96 98anti-parallel
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There are 8 strands in BN sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
17 18anti-parallel
Strand 3
A
31 34anti-parallel
Strand 4
A
122 125parallel
Strand 5
A
39 42anti-parallel
Strand 6
A
101 105parallel
Strand 7
A
86 88anti-parallel
Strand 8
A
66 69anti-parallel
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There are 2 strands in DN sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 77first strand
Strand 2
A
80 84anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 206first strand
Strand 2
A
198 201anti-parallel
Strand 3
A
257 261anti-parallel
Strand 4
A
264 268anti-parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 197first strand
Strand 2
A
209 213anti-parallel
Strand 3
A
297 302parallel
Strand 4
A
219 222anti-parallel
Strand 5
A
288 292parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 239first strand
Strand 2
A
243 247anti-parallel
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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 278first strand
Strand 2
A
284 286anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il