Analysis of interatomic Contacts of Structural Units in PDB entry:
1QYY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QYY entry

There are 2 chains in PDB entry 1QYY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 1THR 266
G
 HIS 1THR 266
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1QYY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 52Right-handed 310
Helix 2
2
A
210 212Right-handed 310
Helix 3
3
A
213 223Right-handed alpha
Helix 4
4
A
224 227Right-handed 310
Helix 5
5
A
242 246Right-handed 310
Helix 6
6
A
247 251Right-handed 310
Helix 7
7
A
255 259Right-handed 310
Helix 8
8
G
49 52Right-handed 310
Helix 9
9
G
210 212Right-handed 310
Helix 10
10
G
213 223Right-handed alpha
Helix 11
11
G
224 227Right-handed 310
Helix 12
12
G
242 246Right-handed 310
Helix 13
13
G
247 251Right-handed 310
Helix 14
14
G
255 259Right-handed 310
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There are 4 sheets in PDB entry 1QYY. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
13 16anti-parallel
Strand 3
A
33 37parallel
Strand 4
A
59 61parallel
Strand 5
A
81 83parallel
Strand 6
A
104 106parallel
Strand 7
A
128 130parallel
Strand 8
A
152 154parallel
Strand 9
A
176 178parallel
Strand 10
A
199 201parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 47first strand
Strand 2
A
69 71parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
14 16first strand
Strand 2
G
35 37parallel
Strand 3
G
59 61parallel
Strand 4
G
81 83parallel
Strand 5
G
104 106parallel
Strand 6
G
128 130parallel
Strand 7
G
152 154parallel
Strand 8
G
176 178parallel
Strand 9
G
199 201parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
45 47first strand
Strand 2
G
69 71parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il