Analysis of interatomic Contacts of Structural Units in PDB entry:
1R01


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1R01 entry

There are 2 chains in PDB entry 1R01 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 576ASN 822
A
 VAL 824THR 932
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1R01. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
585 587Right-handed 310
Helix 2
2
A
630 648Right-handed alpha
Helix 3
3
A
677 684Right-handed alpha
Helix 4
4
A
727 732Right-handed 310
Helix 5
5
A
768 785Right-handed alpha
Helix 6
6
A
837 843Right-handed alpha
Helix 7
7
A
847 861Right-handed alpha
Helix 8
8
A
878 886Right-handed alpha
Helix 9
9
A
896 906Right-handed alpha
Helix 10
10
A
910 914Right-handed 310
Helix 11
11
A
916 930Right-handed alpha
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There are 4 sheets in PDB entry 1R01. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
589 597first strand
Strand 2
A
601 608anti-parallel
Strand 3
A
619 625anti-parallel
Strand 4
A
667 671anti-parallel
Strand 5
A
656 660anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
696 698first strand
Strand 2
A
703 704anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
714 715first strand
Strand 2
A
757 758anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
798 800first strand
Strand 2
A
806 808anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il