Analysis of interatomic Contacts of Structural Units in PDB entry:
1R0V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1R0V entry

There are 4 chains in PDB entry 1R0V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 62	VAL 305
B	ASP 62	VAL 305
C	ASP 62	VAL 305
D	PHE 63	VAL 305

There are 36 helices in PDB entry 1R0V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	62	76	Right-handed alpha
Helix 2	2	A	103	111	Right-handed alpha
Helix 3	3	A	163	168	Right-handed alpha
Helix 4	4	A	182	192	Right-handed alpha
Helix 5	5	A	201	213	Right-handed alpha
Helix 6	6	A	215	229	Right-handed alpha
Helix 7	7	A	237	240	Right-handed 310
Helix 8	8	A	251	258	Right-handed 310
Helix 9	9	A	271	285	Right-handed alpha
Helix 10	10	B	64	76	Right-handed alpha
Helix 11	11	B	103	112	Right-handed alpha
Helix 12	12	B	163	168	Right-handed alpha
Helix 13	13	B	183	192	Right-handed alpha
Helix 14	14	B	201	213	Right-handed alpha
Helix 15	15	B	215	229	Right-handed alpha
Helix 16	16	B	237	240	Right-handed 310
Helix 17	17	B	251	258	Right-handed 310
Helix 18	18	B	272	285	Right-handed alpha
Helix 19	19	C	63	76	Right-handed alpha
Helix 20	20	C	103	112	Right-handed alpha
Helix 21	21	C	163	168	Right-handed alpha
Helix 22	22	C	182	192	Right-handed alpha
Helix 23	23	C	201	213	Right-handed alpha
Helix 24	24	C	215	229	Right-handed alpha
Helix 25	25	C	237	240	Right-handed 310
Helix 26	26	C	251	258	Right-handed 310
Helix 27	27	C	272	285	Right-handed alpha
Helix 28	28	D	64	76	Right-handed alpha
Helix 29	29	D	103	112	Right-handed alpha
Helix 30	30	D	163	168	Right-handed alpha
Helix 31	31	D	182	192	Right-handed alpha
Helix 32	32	D	201	213	Right-handed alpha
Helix 33	33	D	215	229	Right-handed alpha
Helix 34	34	D	237	240	Right-handed 310
Helix 35	35	D	251	258	Right-handed 310
Helix 36	36	D	272	285	Right-handed alpha

There are 11 sheets in PDB entry 1R0V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	83	first strand
Strand 2	A	86	88	anti-parallel
Strand 3	A	92	97	anti-parallel
Strand 4	A	118	122	parallel
Strand 5	A	128	134	anti-parallel
Strand 6	A	296	303	anti-parallel
Strand 7	A	288	293	anti-parallel
Strand 8	A	260	264	parallel
Strand 9	A	243	246	anti-parallel
Strand 10	A	232	235	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	175	first strand
Strand 2	A	178	181	anti-parallel
Strand 3	A	157	160	anti-parallel
Strand 4	A	149	154	anti-parallel
Strand 5	A	195	197	parallel

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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	83	first strand
Strand 2	B	86	88	anti-parallel
Strand 3	B	92	97	anti-parallel
Strand 4	B	118	122	parallel
Strand 5	B	128	134	anti-parallel
Strand 6	B	296	303	anti-parallel
Strand 7	B	288	293	anti-parallel
Strand 8	B	260	264	parallel
Strand 9	B	243	246	anti-parallel
Strand 10	B	232	235	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	270	271	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	175	first strand
Strand 2	B	178	182	anti-parallel
Strand 3	B	157	160	anti-parallel
Strand 4	B	149	154	anti-parallel
Strand 5	B	195	197	parallel

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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	83	first strand
Strand 2	C	86	88	anti-parallel
Strand 3	C	92	97	anti-parallel
Strand 4	C	118	122	parallel
Strand 5	C	128	134	anti-parallel
Strand 6	C	296	303	anti-parallel
Strand 7	C	288	293	anti-parallel
Strand 8	C	260	264	parallel
Strand 9	C	243	246	anti-parallel
Strand 10	C	232	235	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	C	270	271	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	175	first strand
Strand 2	C	178	181	anti-parallel
Strand 3	C	157	160	anti-parallel
Strand 4	C	149	154	anti-parallel
Strand 5	C	195	197	parallel

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There are 10 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	83	first strand
Strand 2	D	86	88	anti-parallel
Strand 3	D	92	97	anti-parallel
Strand 4	D	118	122	parallel
Strand 5	D	128	134	anti-parallel
Strand 6	D	296	303	anti-parallel
Strand 7	D	288	293	anti-parallel
Strand 8	D	260	264	parallel
Strand 9	D	243	246	anti-parallel
Strand 10	D	232	235	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	102	first strand
Strand 2	D	270	271	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	175	first strand
Strand 2	D	178	181	anti-parallel
Strand 3	D	157	160	anti-parallel
Strand 4	D	149	154	anti-parallel
Strand 5	D	195	197	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1R0V

Analysis of interatomic Contacts of Structural Units in PDB entry:
1R0V