Analysis of interatomic Contacts of Structural Units in PDB entry:
1R11


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1R11 entry

There are 2 chains in PDB entry 1R11 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3VAL 305
B
 GLY 3VAL 305
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1R11. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 17Right-handed alpha
Helix 2
2
A
31 41Right-handed alpha
Helix 3
3
A
48 58Right-handed alpha
Helix 4
4
A
62 76Right-handed alpha
Helix 5
5
A
103 109Right-handed alpha
Helix 6
6
A
163 168Right-handed alpha
Helix 7
7
A
182 192Right-handed alpha
Helix 8
8
A
201 213Right-handed alpha
Helix 9
9
A
215 229Right-handed alpha
Helix 10
10
A
237 240Right-handed 310
Helix 11
11
A
251 258Right-handed 310
Helix 12
12
A
272 285Right-handed alpha
Helix 13
13
B
12 17Right-handed alpha
Helix 14
14
B
31 41Right-handed alpha
Helix 15
15
B
48 58Right-handed alpha
Helix 16
16
B
62 76Right-handed alpha
Helix 17
17
B
103 112Right-handed alpha
Helix 18
18
B
163 168Right-handed alpha
Helix 19
19
B
182 192Right-handed alpha
Helix 20
20
B
201 213Right-handed alpha
Helix 21
21
B
215 229Right-handed alpha
Helix 22
22
B
237 240Right-handed 310
Helix 23
23
B
251 255Right-handed 310
Helix 24
24
B
272 285Right-handed alpha
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There are 8 sheets in PDB entry 1R11. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 10first strand
Strand 2
A
27 30anti-parallel
Strand 3
A
22 23anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
86 88anti-parallel
Strand 3
A
92 97anti-parallel
Strand 4
A
118 122parallel
Strand 5
A
128 134anti-parallel
Strand 6
A
296 303anti-parallel
Strand 7
A
288 293anti-parallel
Strand 8
A
260 264parallel
Strand 9
A
243 246anti-parallel
Strand 10
A
232 235anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
270 271anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 175first strand
Strand 2
A
178 181anti-parallel
Strand 3
A
158 160anti-parallel
Strand 4
A
149 153anti-parallel
Strand 5
A
195 197parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 10first strand
Strand 2
B
27 30anti-parallel
Strand 3
B
22 24anti-parallel
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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 83first strand
Strand 2
B
86 88anti-parallel
Strand 3
B
92 97anti-parallel
Strand 4
B
118 122parallel
Strand 5
B
128 134anti-parallel
Strand 6
B
296 303anti-parallel
Strand 7
B
288 293anti-parallel
Strand 8
B
260 264parallel
Strand 9
B
243 246anti-parallel
Strand 10
B
232 235anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 102first strand
Strand 2
B
270 271anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 175first strand
Strand 2
B
178 181anti-parallel
Strand 3
B
158 160anti-parallel
Strand 4
B
149 153anti-parallel
Strand 5
B
195 197parallel
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