Analysis of interatomic Contacts of Structural Units in PDB entry:
1R17


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1R17 entry

There are 4 chains in PDB entry 1R17 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 276PRO 596
B
 GLY 276PRO 595
C
 GLY 8PRO 18
D
 GLY 8PRO 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1R17. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
279 281Right-handed 310
Helix 2
2
A
304 306Right-handed 310
Helix 3
3
A
375 379Right-handed 310
Helix 4
4
A
505 509Right-handed 310
Helix 5
5
A
514 516Right-handed 310
Helix 6
6
A
551 554Right-handed 310
Helix 7
7
B
279 281Right-handed 310
Helix 8
8
B
304 306Right-handed 310
Helix 9
9
B
375 379Right-handed 310
Helix 10
10
B
505 509Right-handed 310
Helix 11
11
B
514 516Right-handed 310
Helix 12
12
B
551 554Right-handed 310
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There are 8 sheets in PDB entry 1R17. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 292first strand
Strand 2
A
309 317anti-parallel
Strand 3
A
381 389anti-parallel
Strand 4
A
587 593anti-parallel
Strand 5
A
349 351parallel
Strand 6
A
356 363anti-parallel
Strand 7
A
368 373anti-parallel
Strand 8
A
326 330anti-parallel
Strand 9
A
403 411anti-parallel
Strand 10
A
414 423anti-parallel
Strand 11
A
300 302parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 336first strand
Strand 2
A
392 393anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 430first strand
Strand 2
A
433 443anti-parallel
Strand 3
A
448 455anti-parallel
Strand 4
A
537 544anti-parallel
Strand 5
A
485 490anti-parallel
Strand 6
A
510 511anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
518 520first strand
Strand 2
A
525 533anti-parallel
Strand 3
A
462 470anti-parallel
Strand 4
A
556 564anti-parallel
Strand 5
A
572 584anti-parallel
Strand 6
C
10 16anti-parallel
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There are 11 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 292first strand
Strand 2
B
309 317anti-parallel
Strand 3
B
381 393anti-parallel
Strand 4
B
587 593anti-parallel
Strand 5
B
349 351parallel
Strand 6
B
356 363anti-parallel
Strand 7
B
368 373anti-parallel
Strand 8
B
326 330anti-parallel
Strand 9
B
403 411anti-parallel
Strand 10
B
414 423anti-parallel
Strand 11
B
300 302parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 292first strand
Strand 2
B
309 317anti-parallel
Strand 3
B
381 393anti-parallel
Strand 4
B
335 336anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
428 430first strand
Strand 2
B
433 443anti-parallel
Strand 3
B
448 455anti-parallel
Strand 4
B
537 544anti-parallel
Strand 5
B
485 490anti-parallel
Strand 6
B
510 511anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
518 520first strand
Strand 2
B
525 533anti-parallel
Strand 3
B
462 470anti-parallel
Strand 4
B
556 564anti-parallel
Strand 5
B
572 584anti-parallel
Strand 6
D
10 16anti-parallel
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