Analysis of interatomic Contacts of Structural Units in PDB entry:
1R1D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1R1D entry

There are 2 chains in PDB entry 1R1D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 5TRP 246
B
 PRO 5TRP 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 1R1D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 30Right-handed 310
Helix 2
2
A
31 41Right-handed alpha
Helix 3
3
A
56 60Right-handed 310
Helix 4
4
A
64 82Right-handed alpha
Helix 5
5
A
93 104Right-handed alpha
Helix 6
6
A
122 141Right-handed alpha
Helix 7
7
A
144 157Right-handed alpha
Helix 8
8
A
162 176Right-handed alpha
Helix 9
9
A
177 180Right-handed 310
Helix 10
10
A
198 207Right-handed alpha
Helix 11
11
A
223 227Right-handed 310
Helix 12
12
A
229 243Right-handed alpha
Helix 13
13
B
28 41Right-handed alpha
Helix 14
14
B
56 61Right-handed alpha
Helix 15
15
B
64 82Right-handed alpha
Helix 16
16
B
93 104Right-handed alpha
Helix 17
17
B
122 141Right-handed alpha
Helix 18
18
B
144 156Right-handed alpha
Helix 19
19
B
162 176Right-handed alpha
Helix 20
20
B
177 180Right-handed 310
Helix 21
21
B
198 207Right-handed alpha
Helix 22
22
B
223 227Right-handed 310
Helix 23
23
B
229 243Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1R1D. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
44 47anti-parallel
Strand 3
A
17 21parallel
Strand 4
A
87 92parallel
Strand 5
A
111 114parallel
Strand 6
A
184 189parallel
Strand 7
A
212 217parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 11first strand
Strand 2
B
44 47anti-parallel
Strand 3
B
17 21parallel
Strand 4
B
87 92parallel
Strand 5
B
111 114parallel
Strand 6
B
184 189parallel
Strand 7
B
212 217parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il