Analysis of interatomic Contacts of Structural Units in PDB entry:
1R2B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1R2B entry

There are 4 chains in PDB entry 1R2B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5GLU 129
B
 ASP 6SER 128
C
 GLY -1ARG 1430
D
 LEU 1414ARG 1430
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1R2B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 28Right-handed alpha
Helix 2
2
A
47 53Right-handed alpha
Helix 3
3
A
55 61Right-handed alpha
Helix 4
4
A
80 91Right-handed alpha
Helix 5
5
A
101 112Right-handed alpha
Helix 6
6
A
115 127Right-handed alpha
Helix 7
7
B
13 28Right-handed alpha
Helix 8
8
B
47 53Right-handed alpha
Helix 9
9
B
55 61Right-handed alpha
Helix 10
10
B
80 91Right-handed alpha
Helix 11
11
B
101 112Right-handed alpha
Helix 12
12
B
115 126Right-handed alpha
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There are 4 sheets in PDB entry 1R2B. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 98first strand
Strand 2
A
6 11anti-parallel
Strand 3
D
1416 1420parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 45first strand
Strand 2
A
34 38anti-parallel
Strand 3
A
71 73parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 97first strand
Strand 2
B
7 11anti-parallel
Strand 3
C
1416 1420parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 45first strand
Strand 2
B
34 38anti-parallel
Strand 3
B
71 73parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il