Analysis of interatomic Contacts of Structural Units in PDB entry:
1R4F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1R4F entry

There are 2 chains in PDB entry 1R4F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0CYS 327
B
 SER 0CYS 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 1R4F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 25Right-handed alpha
Helix 2
2
A
42 59Right-handed alpha
Helix 3
3
A
86 91Right-handed alpha
Helix 4
4
A
92 97Right-handed 310
Helix 5
5
A
98 113Right-handed alpha
Helix 6
6
A
116 127Right-handed alpha
Helix 7
7
A
140 156Right-handed alpha
Helix 8
8
A
184 189Right-handed alpha
Helix 9
9
A
190 200Right-handed alpha
Helix 10
10
A
209 214Right-handed alpha
Helix 11
11
A
219 225Right-handed alpha
Helix 12
12
A
226 230Right-handed 310
Helix 13
13
A
232 244Right-handed alpha
Helix 14
14
A
259 270Right-handed alpha
Helix 15
15
A
271 274Right-handed 310
Helix 16
16
A
312 324Right-handed alpha
Helix 17
17
B
12 25Right-handed alpha
Helix 18
18
B
42 62Right-handed alpha
Helix 19
19
B
85 92Right-handed alpha
Helix 20
20
B
93 97Right-handed 310
Helix 21
21
B
98 113Right-handed alpha
Helix 22
22
B
116 127Right-handed alpha
Helix 23
23
B
140 151Right-handed alpha
Helix 24
24
B
151 156Right-handed alpha
Helix 25
25
B
184 190Right-handed alpha
Helix 26
26
B
190 200Right-handed alpha
Helix 27
27
B
209 214Right-handed alpha
Helix 28
28
B
219 225Right-handed alpha
Helix 29
29
B
226 230Right-handed 310
Helix 30
30
B
232 244Right-handed alpha
Helix 31
31
B
259 270Right-handed alpha
Helix 32
32
B
271 274Right-handed 310
Helix 33
33
B
312 324Right-handed alpha
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There are 3 sheets in PDB entry 1R4F. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 70first strand
Strand 2
A
29 36parallel
Strand 3
A
3 9parallel
Strand 4
A
132 136parallel
Strand 5
A
158 164parallel
Strand 6
A
205 208parallel
Strand 7
A
304 309parallel
Strand 8
A
275 283anti-parallel
Strand 9
A
294 296anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 70first strand
Strand 2
B
29 36parallel
Strand 3
B
3 9parallel
Strand 4
B
132 136parallel
Strand 5
B
158 164parallel
Strand 6
B
205 208parallel
Strand 7
B
305 309parallel
Strand 8
B
275 279anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
281 283first strand
Strand 2
B
294 296anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il