Analysis of interatomic Contacts of Structural Units in PDB entry:
1R59


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1R59 entry

There are 2 chains in PDB entry 1R59 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
O
 ASN 5VAL 491
X
 ASN 5VAL 491
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 1R59. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
O
49 53Right-handed 310
Helix 2
2
O
61 66Right-handed alpha
Helix 3
3
O
110 120Right-handed alpha
Helix 4
4
O
121 126Right-handed alpha
Helix 5
5
O
137 142Right-handed alpha
Helix 6
6
O
142 147Right-handed alpha
Helix 7
7
O
165 173Right-handed alpha
Helix 8
8
O
183 188Right-handed alpha
Helix 9
9
O
201 206Right-handed alpha
Helix 10
10
O
249 254Right-handed alpha
Helix 11
11
O
311 317Right-handed alpha
Helix 12
12
O
326 331Right-handed 310
Helix 13
13
O
373 401Right-handed alpha
Helix 14
14
O
416 428Right-handed alpha
Helix 15
15
O
441 453Right-handed alpha
Helix 16
16
O
461 465Right-handed 310
Helix 17
17
O
479 485Right-handed alpha
Helix 18
18
X
50 65Right-handed alpha
Helix 19
19
X
114 120Right-handed alpha
Helix 20
20
X
121 126Right-handed alpha
Helix 21
21
X
138 149Right-handed alpha
Helix 22
22
X
166 173Right-handed alpha
Helix 23
23
X
186 190Right-handed 310
Helix 24
24
X
201 208Right-handed alpha
Helix 25
25
X
376 381Right-handed alpha
Helix 26
26
X
387 394Right-handed alpha
Helix 27
27
X
411 415Right-handed 310
Helix 28
28
X
418 422Right-handed 310
Helix 29
29
X
446 450Right-handed 310
Helix 30
30
X
481 486Right-handed alpha
Helix 31
31
X
487 490Right-handed 310
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There are 10 sheets in PDB entry 1R59. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
21 22first strand
Strand 2
O
6 10anti-parallel
Strand 3
O
75 80parallel
Strand 4
O
240 243parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
181 182first strand
Strand 2
O
217 218parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
270 271first strand
Strand 2
O
265 266anti-parallel
Strand 3
O
406 411parallel
Strand 4
O
430 434parallel
Strand 5
O
467 471anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
273 275first strand
Strand 2
O
301 304anti-parallel
Strand 3
O
288 291anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
344 346first strand
Strand 2
O
364 366anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
47 48first strand
Strand 2
X
101 102anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
90 91first strand
Strand 2
X
161 162anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
181 182first strand
Strand 2
X
217 218parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
261 262first strand
Strand 2
X
273 275anti-parallel
Strand 3
X
302 304anti-parallel
Strand 4
X
288 290anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
264 265first strand
Strand 2
X
409 410parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il