Analysis of interatomic Contacts of Structural Units in PDB entry:
1R5J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1R5J entry

There are 2 chains in PDB entry 1R5J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1SER 329
B
 MSE 1SER 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 1R5J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 15Right-handed alpha
Helix 2
2
A
28 40Right-handed alpha
Helix 3
3
A
51 62Right-handed alpha
Helix 4
4
A
79 92Right-handed alpha
Helix 5
5
A
96 104Right-handed alpha
Helix 6
6
A
106 117Right-handed alpha
Helix 7
7
A
131 141Right-handed alpha
Helix 8
8
A
160 163Right-handed 310
Helix 9
9
A
178 196Right-handed alpha
Helix 10
10
A
215 232Right-handed alpha
Helix 11
11
A
242 248Right-handed alpha
Helix 12
12
A
248 256Right-handed alpha
Helix 13
13
A
272 286Right-handed alpha
Helix 14
14
A
311 328Right-handed alpha
Helix 15
15
B
2 15Right-handed alpha
Helix 16
16
B
28 40Right-handed alpha
Helix 17
17
B
51 62Right-handed alpha
Helix 18
18
B
79 92Right-handed alpha
Helix 19
19
B
96 104Right-handed alpha
Helix 20
20
B
106 117Right-handed alpha
Helix 21
21
B
131 141Right-handed alpha
Helix 22
22
B
160 163Right-handed 310
Helix 23
23
B
178 196Right-handed alpha
Helix 24
24
B
215 232Right-handed alpha
Helix 25
25
B
242 248Right-handed alpha
Helix 26
26
B
248 256Right-handed alpha
Helix 27
27
B
272 286Right-handed alpha
Helix 28
28
B
311 328Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1R5J. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
20 23parallel
Strand 3
A
122 125parallel
Strand 4
A
303 305parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 241first strand
Strand 2
A
202 205parallel
Strand 3
A
267 269parallel
Strand 4
A
164 168parallel
Strand 5
A
152 159anti-parallel
Strand 6
A
290 297anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 48first strand
Strand 2
B
20 23parallel
Strand 3
B
122 125parallel
Strand 4
B
303 305parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 241first strand
Strand 2
B
202 205parallel
Strand 3
B
267 269parallel
Strand 4
B
164 168parallel
Strand 5
B
152 159anti-parallel
Strand 6
B
290 297anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il