Analysis of interatomic Contacts of Structural Units in PDB entry:
1R6D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1R6D entry

There is 1 chain in PDB entry 1R6D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1R6D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 23Right-handed alpha
Helix 2
2
A
44 52Right-handed 310
Helix 3
3
A
66 74Right-handed alpha
Helix 4
4
A
88 95Right-handed alpha
Helix 5
5
A
96 104Right-handed alpha
Helix 6
6
A
104 117Right-handed alpha
Helix 7
7
A
129 132Right-handed 310
Helix 8
8
A
149 170Right-handed alpha
Helix 9
9
A
190 201Right-handed alpha
Helix 10
10
A
220 234Right-handed alpha
Helix 11
11
A
250 261Right-handed alpha
Helix 12
12
A
264 266Right-handed 310
Helix 13
13
A
285 293Right-handed alpha
Helix 14
14
A
299 314Right-handed alpha
Helix 15
15
A
314 319Right-handed alpha
Helix 16
16
A
320 322Right-handed 310
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There are 3 sheets in PDB entry 1R6D. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 61first strand
Strand 2
A
32 37parallel
Strand 3
A
2 6parallel
Strand 4
A
79 82parallel
Strand 5
A
121 127parallel
Strand 6
A
173 178parallel
Strand 7
A
239 242parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 182first strand
Strand 2
A
214 219parallel
Strand 3
A
247 249anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 208first strand
Strand 2
A
268 271parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il