Analysis of interatomic Contacts of Structural Units in PDB entry:
1R7M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1R7M entry

There are 6 chains in PDB entry 1R7M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 A 2 C 25
D
 G 2 T 25
E
 A 2 C 25
F
 G 2 T 25
A
 ASN 3PRO 225
B
 ASN 303PRO 525
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 1R7M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 10Right-handed alpha
Helix 2
2
A
16 26Right-handed alpha
Helix 3
3
A
30 43Right-handed alpha
Helix 4
4
A
64 75Right-handed alpha
Helix 5
5
A
76 79Right-handed 310
Helix 6
6
A
106 108Right-handed 310
Helix 7
7
A
109 116Right-handed alpha
Helix 8
8
A
127 133Right-handed alpha
Helix 9
9
A
134 145Right-handed alpha
Helix 10
10
A
168 184Right-handed alpha
Helix 11
11
A
204 213Right-handed alpha
Helix 12
12
A
217 224Right-handed 310
Helix 13
13
B
305 310Right-handed alpha
Helix 14
14
B
316 326Right-handed alpha
Helix 15
15
B
330 343Right-handed alpha
Helix 16
16
B
364 375Right-handed alpha
Helix 17
17
B
376 379Right-handed 310
Helix 18
18
B
406 408Right-handed 310
Helix 19
19
B
409 417Right-handed alpha
Helix 20
20
B
427 433Right-handed alpha
Helix 21
21
B
434 445Right-handed alpha
Helix 22
22
B
468 484Right-handed alpha
Helix 23
23
B
504 513Right-handed alpha
Helix 24
24
B
514 516Right-handed 310
Helix 25
25
B
517 524Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 1R7M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
57 62anti-parallel
Strand 3
A
95 102anti-parallel
Strand 4
A
84 89anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 118first strand
Strand 2
A
121 122anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 148first strand
Strand 2
A
160 162anti-parallel
Strand 3
A
195 200anti-parallel
Strand 4
A
187 192anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
346 348first strand
Strand 2
B
357 362anti-parallel
Strand 3
B
395 402anti-parallel
Strand 4
B
384 389anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
446 448first strand
Strand 2
B
460 462anti-parallel
Strand 3
B
495 500anti-parallel
Strand 4
B
487 492anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il