Analysis of interatomic Contacts of Structural Units in PDB entry:
1R7R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1R7R entry

There is 1 chain in PDB entry 1R7R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 17HIS 735
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 1R7R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 49Right-handed alpha
Helix 2
2
A
85 92Right-handed alpha
Helix 3
3
A
120 123Right-handed 310
Helix 4
4
A
129 134Right-handed alpha
Helix 5
5
A
134 140Right-handed alpha
Helix 6
6
A
202 206Right-handed 310
Helix 7
7
A
210 226Right-handed alpha
Helix 8
8
A
226 233Right-handed alpha
Helix 9
9
A
250 262Right-handed alpha
Helix 10
10
A
270 275Right-handed alpha
Helix 11
11
A
280 296Right-handed alpha
Helix 12
12
A
305 309Right-handed 310
Helix 13
13
A
311 316Right-handed alpha
Helix 14
14
A
320 334Right-handed alpha
Helix 15
15
A
349 353Right-handed 310
Helix 16
16
A
354 358Right-handed 310
Helix 17
17
A
373 384Right-handed alpha
Helix 18
18
A
395 403Right-handed alpha
Helix 19
19
A
407 431Right-handed alpha
Helix 20
20
A
438 445Right-handed alpha
Helix 21
21
A
448 456Right-handed alpha
Helix 22
22
A
487 493Right-handed alpha
Helix 23
23
A
493 499Right-handed alpha
Helix 24
24
A
499 506Right-handed alpha
Helix 25
25
A
523 535Right-handed alpha
Helix 26
26
A
543 549Right-handed alpha
Helix 27
27
A
554 569Right-handed alpha
Helix 28
28
A
578 582Right-handed 310
Helix 29
29
A
584 589Right-handed alpha
Helix 30
30
A
593 607Right-handed alpha
Helix 31
31
A
631 635Right-handed 310
Helix 32
32
A
650 661Right-handed alpha
Helix 33
33
A
672 680Right-handed alpha
Helix 34
34
A
684 702Right-handed alpha
Helix 35
35
A
727 735Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 1R7R. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 29first strand
Strand 2
A
81 83parallel
Strand 3
A
38 41anti-parallel
Strand 4
A
66 73parallel
Strand 5
A
56 60anti-parallel
Strand 6
A
99 104anti-parallel
Strand 7
A
25 29anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 118first strand
Strand 2
A
159 168anti-parallel
Strand 3
A
151 156anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 147first strand
Strand 2
A
173 176anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 269first strand
Strand 2
A
299 303parallel
Strand 3
A
341 347parallel
Strand 4
A
240 244parallel
Strand 5
A
365 368parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 542first strand
Strand 2
A
572 576parallel
Strand 3
A
618 621parallel
Strand 4
A
513 516parallel
Strand 5
A
640 644parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il