Analysis of interatomic Contacts of Structural Units in PDB entry:
1R8H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1R8H entry

There are 6 chains in PDB entry 1R8H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 281LEU 366
B
 SER 281LEU 366
C
 SER 281LEU 366
D
 SER 281LEU 366
E
 SER 281LEU 366
F
 SER 281LEU 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1R8H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
292 306Right-handed alpha
Helix 2
2
A
307 310Right-handed 310
Helix 3
3
A
337 348Right-handed alpha
Helix 4
4
A
364 366Right-handed 310
Helix 5
5
B
292 306Right-handed alpha
Helix 6
6
B
307 310Right-handed 310
Helix 7
7
B
337 348Right-handed alpha
Helix 8
8
B
364 366Right-handed 310
Helix 9
9
C
292 306Right-handed alpha
Helix 10
10
C
307 310Right-handed 310
Helix 11
11
C
337 348Right-handed alpha
Helix 12
12
C
364 366Right-handed 310
Helix 13
13
D
292 306Right-handed alpha
Helix 14
14
D
307 310Right-handed 310
Helix 15
15
D
337 348Right-handed alpha
Helix 16
16
D
364 366Right-handed 310
Helix 17
17
E
292 306Right-handed alpha
Helix 18
18
E
307 310Right-handed 310
Helix 19
19
E
337 348Right-handed alpha
Helix 20
20
E
364 366Right-handed 310
Helix 21
21
F
292 306Right-handed alpha
Helix 22
22
F
307 310Right-handed 310
Helix 23
23
F
337 348Right-handed alpha
Helix 24
24
F
364 366Right-handed 310
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There are 6 sheets in PDB entry 1R8H. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 334first strand
Strand 2
A
283 291anti-parallel
Strand 3
A
355 362anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 334first strand
Strand 2
B
283 291anti-parallel
Strand 3
B
355 362anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
329 334first strand
Strand 2
C
283 291anti-parallel
Strand 3
C
355 362anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
329 334first strand
Strand 2
D
283 291anti-parallel
Strand 3
D
355 362anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
329 334first strand
Strand 2
E
283 291anti-parallel
Strand 3
E
355 362anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
329 334first strand
Strand 2
F
283 291anti-parallel
Strand 3
F
355 362anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il