Analysis of interatomic Contacts of Structural Units in PDB entry:
1R8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1R8J entry

There are 2 chains in PDB entry 1R8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1ARG 282
B
 VAL 1ARG 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1R8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 24Right-handed alpha
Helix 2
2
A
36 47Right-handed alpha
Helix 3
3
A
62 73Right-handed alpha
Helix 4
4
A
110 112Right-handed 310
Helix 5
5
A
113 129Right-handed alpha
Helix 6
6
A
148 150Right-handed 310
Helix 7
7
A
151 164Right-handed alpha
Helix 8
8
A
174 178Right-handed 310
Helix 9
9
A
183 206Right-handed alpha
Helix 10
10
A
211 226Right-handed alpha
Helix 11
11
A
229 250Right-handed alpha
Helix 12
12
A
256 260Right-handed 310
Helix 13
13
A
261 280Right-handed alpha
Helix 14
14
B
13 24Right-handed alpha
Helix 15
15
B
36 47Right-handed alpha
Helix 16
16
B
62 73Right-handed alpha
Helix 17
17
B
113 129Right-handed alpha
Helix 18
18
B
151 164Right-handed alpha
Helix 19
19
B
174 182Right-handed 310
Helix 20
20
B
183 206Right-handed alpha
Helix 21
21
B
211 226Right-handed alpha
Helix 22
22
B
229 251Right-handed alpha
Helix 23
23
B
254 260Right-handed 310
Helix 24
24
B
261 279Right-handed alpha
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There are 3 sheets in PDB entry 1R8J. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 34first strand
Strand 2
A
5 10parallel
Strand 3
A
53 57parallel
Strand 4
A
79 82parallel
Strand 5
A
104 106parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 171first strand
Strand 2
B
165 171anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 34first strand
Strand 2
B
5 10parallel
Strand 3
B
53 57parallel
Strand 4
B
79 82parallel
Strand 5
B
104 106parallel
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