Analysis of interatomic Contacts of Structural Units in PDB entry:
1R8Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1R8Y entry

There are 8 chains in PDB entry 1R8Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 1	ASP 292
B	VAL 1	ASP 292
C	VAL 1	LYS 290
D	VAL 1	ASP 292
E	VAL 1	ASP 292
F	VAL 1	THR 291
G	VAL 1	ASP 292
H	VAL 1	ASP 292

There are 88 helices in PDB entry 1R8Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	24	36	Right-handed alpha
Helix 2	2	A	41	55	Right-handed alpha
Helix 3	3	A	68	77	Right-handed alpha
Helix 4	4	A	87	101	Right-handed alpha
Helix 5	5	A	104	109	Right-handed alpha
Helix 6	6	A	116	118	Right-handed 310
Helix 7	7	A	119	124	Right-handed alpha
Helix 8	8	A	138	143	Right-handed 310
Helix 9	9	A	150	162	Right-handed alpha
Helix 10	10	A	176	184	Right-handed alpha
Helix 11	11	A	246	258	Right-handed alpha
Helix 12	12	B	24	36	Right-handed alpha
Helix 13	13	B	41	55	Right-handed alpha
Helix 14	14	B	68	77	Right-handed alpha
Helix 15	15	B	87	101	Right-handed alpha
Helix 16	16	B	104	109	Right-handed alpha
Helix 17	17	B	116	118	Right-handed 310
Helix 18	18	B	119	124	Right-handed alpha
Helix 19	19	B	138	143	Right-handed 310
Helix 20	20	B	150	163	Right-handed alpha
Helix 21	21	B	176	184	Right-handed alpha
Helix 22	22	B	246	257	Right-handed alpha
Helix 23	23	C	24	36	Right-handed alpha
Helix 24	24	C	41	55	Right-handed alpha
Helix 25	25	C	68	77	Right-handed alpha
Helix 26	26	C	87	101	Right-handed alpha
Helix 27	27	C	104	109	Right-handed alpha
Helix 28	28	C	116	118	Right-handed 310
Helix 29	29	C	119	124	Right-handed alpha
Helix 30	30	C	138	143	Right-handed 310
Helix 31	31	C	150	163	Right-handed alpha
Helix 32	32	C	176	184	Right-handed alpha
Helix 33	33	C	246	258	Right-handed alpha
Helix 34	34	D	24	36	Right-handed alpha
Helix 35	35	D	41	55	Right-handed alpha
Helix 36	36	D	68	77	Right-handed alpha
Helix 37	37	D	87	101	Right-handed alpha
Helix 38	38	D	104	109	Right-handed alpha
Helix 39	39	D	116	118	Right-handed 310
Helix 40	40	D	119	124	Right-handed alpha
Helix 41	41	D	138	143	Right-handed 310
Helix 42	42	D	150	163	Right-handed alpha
Helix 43	43	D	176	184	Right-handed alpha
Helix 44	44	D	246	258	Right-handed alpha
Helix 45	45	E	24	35	Right-handed alpha
Helix 46	46	E	41	55	Right-handed alpha
Helix 47	47	E	68	77	Right-handed alpha
Helix 48	48	E	87	101	Right-handed alpha
Helix 49	49	E	104	109	Right-handed alpha
Helix 50	50	E	116	118	Right-handed 310
Helix 51	51	E	119	124	Right-handed alpha
Helix 52	52	E	138	143	Right-handed 310
Helix 53	53	E	150	163	Right-handed alpha
Helix 54	54	E	176	184	Right-handed alpha
Helix 55	55	E	247	258	Right-handed alpha
Helix 56	56	F	24	36	Right-handed alpha
Helix 57	57	F	41	55	Right-handed alpha
Helix 58	58	F	68	77	Right-handed alpha
Helix 59	59	F	87	101	Right-handed alpha
Helix 60	60	F	104	109	Right-handed alpha
Helix 61	61	F	116	118	Right-handed 310
Helix 62	62	F	119	124	Right-handed alpha
Helix 63	63	F	138	143	Right-handed 310
Helix 64	64	F	150	163	Right-handed alpha
Helix 65	65	F	176	184	Right-handed alpha
Helix 66	66	F	246	258	Right-handed alpha
Helix 67	67	G	24	36	Right-handed alpha
Helix 68	68	G	41	55	Right-handed alpha
Helix 69	69	G	68	77	Right-handed alpha
Helix 70	70	G	87	101	Right-handed alpha
Helix 71	71	G	104	109	Right-handed alpha
Helix 72	72	G	116	118	Right-handed 310
Helix 73	73	G	119	124	Right-handed alpha
Helix 74	74	G	138	143	Right-handed 310
Helix 75	75	G	150	163	Right-handed alpha
Helix 76	76	G	176	184	Right-handed alpha
Helix 77	77	G	246	258	Right-handed alpha
Helix 78	78	H	24	35	Right-handed alpha
Helix 79	79	H	41	55	Right-handed alpha
Helix 80	80	H	68	77	Right-handed alpha
Helix 81	81	H	87	101	Right-handed alpha
Helix 82	82	H	104	109	Right-handed alpha
Helix 83	83	H	116	118	Right-handed 310
Helix 84	84	H	119	124	Right-handed alpha
Helix 85	85	H	138	143	Right-handed 310
Helix 86	86	H	150	162	Right-handed alpha
Helix 87	87	H	176	184	Right-handed alpha
Helix 88	88	H	246	258	Right-handed alpha

There are 13 sheets in PDB entry 1R8Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	114	first strand
Strand 2	A	80	85	parallel
Strand 3	A	59	62	parallel
Strand 4	A	130	135	parallel
Strand 5	A	164	175	parallel
Strand 6	A	283	290	anti-parallel
Strand 7	A	262	267	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	242	first strand
Strand 2	A	212	222	anti-parallel
Strand 3	A	202	209	anti-parallel
Strand 4	D	202	209	anti-parallel
Strand 5	D	212	224	anti-parallel
Strand 6	D	234	242	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	6	first strand
Strand 2	C	4	5	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	114	first strand
Strand 2	B	80	85	parallel
Strand 3	B	59	62	parallel
Strand 4	B	130	135	parallel
Strand 5	B	164	175	parallel
Strand 6	B	283	290	anti-parallel
Strand 7	B	262	267	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	242	first strand
Strand 2	B	212	222	anti-parallel
Strand 3	B	200	209	anti-parallel
Strand 4	C	200	209	anti-parallel
Strand 5	C	212	222	anti-parallel
Strand 6	C	236	242	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	114	first strand
Strand 2	C	80	85	parallel
Strand 3	C	59	62	parallel
Strand 4	C	130	135	parallel
Strand 5	C	164	175	parallel
Strand 6	C	283	289	anti-parallel
Strand 7	C	263	267	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	114	first strand
Strand 2	D	80	85	parallel
Strand 3	D	59	62	parallel
Strand 4	D	130	135	parallel
Strand 5	D	164	175	parallel
Strand 6	D	283	290	anti-parallel
Strand 7	D	262	267	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	111	114	first strand
Strand 2	E	80	85	parallel
Strand 3	E	59	62	parallel
Strand 4	E	130	135	parallel
Strand 5	E	164	175	parallel
Strand 6	E	283	289	anti-parallel
Strand 7	E	265	267	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	235	242	first strand
Strand 2	E	212	223	anti-parallel
Strand 3	E	200	209	anti-parallel
Strand 4	H	202	209	anti-parallel
Strand 5	H	212	222	anti-parallel
Strand 6	H	236	242	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	111	114	first strand
Strand 2	F	80	85	parallel
Strand 3	F	59	62	parallel
Strand 4	F	130	135	parallel
Strand 5	F	164	175	parallel
Strand 6	F	283	289	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	236	242	first strand
Strand 2	F	212	222	anti-parallel
Strand 3	F	202	209	anti-parallel
Strand 4	G	200	209	anti-parallel
Strand 5	G	212	222	anti-parallel
Strand 6	G	236	242	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	111	114	first strand
Strand 2	G	80	85	parallel
Strand 3	G	59	62	parallel
Strand 4	G	130	135	parallel
Strand 5	G	164	175	parallel
Strand 6	G	283	290	anti-parallel
Strand 7	G	262	267	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	111	114	first strand
Strand 2	H	80	85	parallel
Strand 3	H	59	62	parallel
Strand 4	H	130	135	parallel
Strand 5	H	164	175	parallel
Strand 6	H	283	290	anti-parallel
Strand 7	H	262	267	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1R8Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
1R8Y