Analysis of interatomic Contacts of Structural Units in PDB entry:
1RAJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RAJ entry

There is 1 chain in PDB entry 1RAJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 70PHE 461
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1RAJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
71 88Right-handed alpha
Helix 2
2
A
192 201Right-handed alpha
Helix 3
3
A
213 218Right-handed alpha
Helix 4
4
A
220 225Right-handed alpha
Helix 5
5
A
236 241Right-handed alpha
Helix 6
6
A
242 255Right-handed alpha
Helix 7
7
A
293 313Right-handed alpha
Helix 8
8
A
317 321Right-handed 310
Helix 9
9
A
339 349Right-handed alpha
Helix 10
10
A
393 399Right-handed alpha
Helix 11
11
A
406 408Right-handed 310
Helix 12
12
A
409 422Right-handed alpha
Helix 13
13
A
425 437Right-handed alpha
Helix 14
14
A
439 444Right-handed alpha
Helix 15
15
A
449 460Right-handed alpha
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There are 3 sheets in PDB entry 1RAJ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 230first strand
Strand 2
A
329 334anti-parallel
Strand 3
A
322 326anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
A
354 355anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 380first strand
Strand 2
A
388 391anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il