Analysis of interatomic Contacts of Structural Units in PDB entry:
1RC6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RC6 entry

There are 2 chains in PDB entry 1RC6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1009ILE 1261
B
 GLY 1009ILE 1261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1RC6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1010 1015Right-handed alpha
Helix 2
2
A
1030 1034Right-handed 310
Helix 3
3
A
1052 1056Right-handed 310
Helix 4
4
A
1152 1154Right-handed 310
Helix 5
5
B
1010 1015Right-handed alpha
Helix 6
6
B
1030 1034Right-handed 310
Helix 7
7
B
1052 1056Right-handed 310
Helix 8
8
B
1152 1154Right-handed 310
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There are 8 sheets in PDB entry 1RC6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1020 1021first strand
Strand 2
A
1026 1029anti-parallel
Strand 3
A
1227 1230anti-parallel
Strand 4
A
1202 1208anti-parallel
Strand 5
A
1247 1254anti-parallel
Strand 6
A
1179 1186anti-parallel
Strand 7
A
1166 1169anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1042 1049first strand
Strand 2
A
1060 1072anti-parallel
Strand 3
A
1118 1121anti-parallel
Strand 4
A
1091 1096anti-parallel
Strand 5
A
1099 1104anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1042 1049first strand
Strand 2
A
1060 1072anti-parallel
Strand 3
A
1127 1135anti-parallel
Strand 4
A
1081 1089anti-parallel
Strand 5
A
1107 1111anti-parallel
Strand 6
A
1147 1150anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1194 1198first strand
Strand 2
A
1234 1240anti-parallel
Strand 3
A
1210 1214anti-parallel
Strand 4
A
1219 1223anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1020 1021first strand
Strand 2
B
1026 1029anti-parallel
Strand 3
B
1227 1230anti-parallel
Strand 4
B
1202 1208anti-parallel
Strand 5
B
1248 1254anti-parallel
Strand 6
B
1179 1185anti-parallel
Strand 7
B
1166 1169anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1042 1049first strand
Strand 2
B
1060 1072anti-parallel
Strand 3
B
1117 1121anti-parallel
Strand 4
B
1091 1096anti-parallel
Strand 5
B
1099 1104anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1042 1049first strand
Strand 2
B
1060 1072anti-parallel
Strand 3
B
1127 1135anti-parallel
Strand 4
B
1081 1089anti-parallel
Strand 5
B
1107 1111anti-parallel
Strand 6
B
1147 1150anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1194 1198first strand
Strand 2
B
1234 1240anti-parallel
Strand 3
B
1210 1214anti-parallel
Strand 4
B
1219 1223anti-parallel
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