Analysis of interatomic Contacts of Structural Units in PDB entry:
1RD5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RD5 entry

There are 2 chains in PDB entry 1RD5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLY 262
B
 SER 2GLY 262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 1RD5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 15Right-handed alpha
Helix 2
2
A
30 44Right-handed alpha
Helix 3
3
A
62 74Right-handed alpha
Helix 4
4
A
78 90Right-handed alpha
Helix 5
5
A
91 93Right-handed 310
Helix 6
6
A
103 108Right-handed alpha
Helix 7
7
A
111 117Right-handed alpha
Helix 8
8
A
131 142Right-handed alpha
Helix 9
9
A
155 166Right-handed alpha
Helix 10
10
A
187 200Right-handed alpha
Helix 11
11
A
212 222Right-handed alpha
Helix 12
12
A
230 239Right-handed alpha
Helix 13
13
A
242 261Right-handed alpha
Helix 14
14
B
4 15Right-handed alpha
Helix 15
15
B
30 44Right-handed alpha
Helix 16
16
B
62 75Right-handed alpha
Helix 17
17
B
78 90Right-handed alpha
Helix 18
18
B
91 93Right-handed 310
Helix 19
19
B
103 107Right-handed 310
Helix 20
20
B
110 117Right-handed alpha
Helix 21
21
B
128 130Right-handed 310
Helix 22
22
B
131 142Right-handed alpha
Helix 23
23
B
155 166Right-handed alpha
Helix 24
24
B
188 200Right-handed alpha
Helix 25
25
B
212 222Right-handed alpha
Helix 26
26
B
230 239Right-handed alpha
Helix 27
27
B
242 261Right-handed alpha
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There are 2 sheets in PDB entry 1RD5. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
121 123parallel
Strand 3
A
97 100parallel
Strand 4
A
49 52parallel
Strand 5
A
19 25parallel
Strand 6
A
226 229parallel
Strand 7
A
204 207parallel
Strand 8
A
170 173parallel
Strand 9
A
148 150parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 146first strand
Strand 2
B
119 123parallel
Strand 3
B
97 100parallel
Strand 4
B
49 52parallel
Strand 5
B
19 25parallel
Strand 6
B
226 229parallel
Strand 7
B
204 206parallel
Strand 8
B
170 172parallel
Strand 9
B
148 150parallel
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