Analysis of interatomic Contacts of Structural Units in PDB entry:
1RDF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RDF entry

There are 6 chains in PDB entry 1RDF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5SER 267
B
 LYS 5SER 267
C
 LYS 5SER 267
D
 LYS 5SER 267
E
 LYS 5SER 267
F
 LYS 5SER 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 89 helices in PDB entry 1RDF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 35Right-handed alpha
Helix 2
2
A
41 46Right-handed alpha
Helix 3
3
A
63 74Right-handed alpha
Helix 4
4
A
79 84Right-handed alpha
Helix 5
5
A
87 96Right-handed alpha
Helix 6
6
A
97 102Right-handed 310
Helix 7
7
A
107 118Right-handed alpha
Helix 8
8
A
129 143Right-handed alpha
Helix 9
9
A
163 174Right-handed alpha
Helix 10
10
A
177 179Right-handed 310
Helix 11
11
A
187 198Right-handed alpha
Helix 12
12
A
222 241Right-handed alpha
Helix 13
13
A
251 253Right-handed 310
Helix 14
14
A
254 263Right-handed alpha
Helix 15
15
B
22 37Right-handed alpha
Helix 16
16
B
41 47Right-handed alpha
Helix 17
17
B
55 60Right-handed alpha
Helix 18
18
B
87 96Right-handed alpha
Helix 19
19
B
97 101Right-handed 310
Helix 20
20
B
107 117Right-handed alpha
Helix 21
21
B
129 142Right-handed alpha
Helix 22
22
B
152 156Right-handed 310
Helix 23
23
B
163 174Right-handed alpha
Helix 24
24
B
177 179Right-handed 310
Helix 25
25
B
187 198Right-handed alpha
Helix 26
26
B
214 219Right-handed alpha
Helix 27
27
B
224 240Right-handed alpha
Helix 28
28
B
248 250Right-handed 310
Helix 29
29
B
251 262Right-handed alpha
Helix 30
30
C
25 33Right-handed alpha
Helix 31
31
C
41 46Right-handed alpha
Helix 32
32
C
53 58Right-handed alpha
Helix 33
33
C
79 84Right-handed alpha
Helix 34
34
C
89 95Right-handed alpha
Helix 35
35
C
97 102Right-handed 310
Helix 36
36
C
106 114Right-handed alpha
Helix 37
37
C
129 144Right-handed alpha
Helix 38
38
C
163 174Right-handed alpha
Helix 39
39
C
177 179Right-handed 310
Helix 40
40
C
187 198Right-handed alpha
Helix 41
41
C
208 212Right-handed 310
Helix 42
42
C
222 240Right-handed alpha
Helix 43
43
C
251 262Right-handed alpha
Helix 44
44
D
22 36Right-handed alpha
Helix 45
45
D
41 47Right-handed alpha
Helix 46
46
D
54 63Right-handed alpha
Helix 47
47
D
65 75Right-handed alpha
Helix 48
48
D
79 87Right-handed alpha
Helix 49
49
D
88 96Right-handed alpha
Helix 50
50
D
97 101Right-handed 310
Helix 51
51
D
108 118Right-handed alpha
Helix 52
52
D
129 134Right-handed alpha
Helix 53
53
D
152 156Right-handed 310
Helix 54
54
D
164 173Right-handed alpha
Helix 55
55
D
187 198Right-handed alpha
Helix 56
56
D
216 221Right-handed alpha
Helix 57
57
D
222 240Right-handed alpha
Helix 58
58
D
251 262Right-handed alpha
Helix 59
59
E
22 33Right-handed alpha
Helix 60
60
E
43 47Right-handed 310
Helix 61
61
E
53 62Right-handed alpha
Helix 62
62
E
63 75Right-handed alpha
Helix 63
63
E
79 98Right-handed alpha
Helix 64
64
E
99 102Right-handed 310
Helix 65
65
E
107 118Right-handed alpha
Helix 66
66
E
129 142Right-handed alpha
Helix 67
67
E
152 156Right-handed 310
Helix 68
68
E
163 174Right-handed alpha
Helix 69
69
E
187 198Right-handed alpha
Helix 70
70
E
214 219Right-handed alpha
Helix 71
71
E
222 240Right-handed alpha
Helix 72
72
E
248 250Right-handed 310
Helix 73
73
E
251 262Right-handed alpha
Helix 74
74
F
23 35Right-handed alpha
Helix 75
75
F
41 46Right-handed alpha
Helix 76
76
F
54 62Right-handed alpha
Helix 77
77
F
66 74Right-handed alpha
Helix 78
78
F
79 98Right-handed alpha
Helix 79
79
F
99 101Right-handed 310
Helix 80
80
F
107 117Right-handed alpha
Helix 81
81
F
129 142Right-handed alpha
Helix 82
82
F
152 156Right-handed 310
Helix 83
83
F
163 174Right-handed alpha
Helix 84
84
F
177 179Right-handed 310
Helix 85
85
F
187 198Right-handed alpha
Helix 86
86
F
216 220Right-handed 310
Helix 87
87
F
221 240Right-handed alpha
Helix 88
88
F
248 250Right-handed 310
Helix 89
89
F
251 262Right-handed alpha
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There are 8 sheets in PDB entry 1RDF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 124first strand
Strand 2
A
8 11parallel
Strand 3
A
181 185parallel
Strand 4
A
200 204parallel
Strand 5
A
244 246parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 124first strand
Strand 2
B
8 11parallel
Strand 3
B
181 185parallel
Strand 4
B
200 204parallel
Strand 5
B
244 246parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 266first strand
Strand 2
C
264 266anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
121 124first strand
Strand 2
C
8 11parallel
Strand 3
C
181 185parallel
Strand 4
C
200 204parallel
Strand 5
C
244 246parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
121 124first strand
Strand 2
D
8 11parallel
Strand 3
D
182 185parallel
Strand 4
D
200 204parallel
Strand 5
D
244 246parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
121 124first strand
Strand 2
E
8 11parallel
Strand 3
E
182 185parallel
Strand 4
E
200 204parallel
Strand 5
E
244 246parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
121 125first strand
Strand 2
F
8 12parallel
Strand 3
F
181 182parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
202 204first strand
Strand 2
F
244 246parallel
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