Analysis of interatomic Contacts of Structural Units in PDB entry:
1RDR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RDR entry

There is 1 chain in PDB entry 1RDR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 12PHE 461
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1RDR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 24Right-handed 310
Helix 2
2
A
72 88Right-handed alpha
Helix 3
3
A
187 190Right-handed alpha
Helix 4
4
A
192 200Right-handed alpha
Helix 5
5
A
214 224Right-handed alpha
Helix 6
6
A
237 240Right-handed alpha
Helix 7
7
A
243 255Right-handed alpha
Helix 8
8
A
262 265Right-handed 310
Helix 9
9
A
293 312Right-handed alpha
Helix 10
10
A
318 320Right-handed 310
Helix 11
11
A
340 350Right-handed alpha
Helix 12
12
A
394 402Right-handed alpha
Helix 13
13
A
410 424Right-handed alpha
Helix 14
14
A
426 438Right-handed alpha
Helix 15
15
A
440 444Right-handed alpha
Helix 16
16
A
450 459Right-handed alpha
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There are 2 sheets in PDB entry 1RDR. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 231first strand
Strand 2
A
329 334anti-parallel
Strand 3
A
324 326anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 380first strand
Strand 2
A
388 392anti-parallel
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