Analysis of interatomic Contacts of Structural Units in PDB entry:
1RDW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RDW entry

There is 1 chain in PDB entry 1RDW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 THR 5PHE 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1RDW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
55 61Right-handed alpha
Helix 2
2
X
78 92Right-handed alpha
Helix 3
3
X
97 101Right-handed 310
Helix 4
4
X
112 126Right-handed alpha
Helix 5
5
X
137 145Right-handed alpha
Helix 6
6
X
172 175Right-handed 310
Helix 7
7
X
181 194Right-handed alpha
Helix 8
8
X
202 217Right-handed alpha
Helix 9
9
X
222 231Right-handed alpha
Helix 10
10
X
233 237Right-handed 310
Helix 11
11
X
252 260Right-handed alpha
Helix 12
12
X
261 262Right-handed 310
Helix 13
13
X
263 268Right-handed 310
Helix 14
14
X
273 283Right-handed alpha
Helix 15
15
X
286 295Right-handed alpha
Helix 16
16
X
301 306Right-handed 310
Helix 17
17
X
308 321Right-handed alpha
Helix 18
18
X
337 349Right-handed alpha
Helix 19
19
X
350 355Right-handed 310
Helix 20
20
X
359 366Right-handed alpha
Helix 21
21
X
367 372Right-handed 310
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There are 6 sheets in PDB entry 1RDW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
29 32first strand
Strand 2
X
16 21anti-parallel
Strand 3
X
8 12anti-parallel
Strand 4
X
103 107parallel
Strand 5
X
131 136parallel
Strand 6
X
357 358anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
53 54first strand
Strand 2
X
35 38anti-parallel
Strand 3
X
65 68anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
71 72first strand
Strand 2
X
75 76anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
169 170first strand
Strand 2
X
160 166anti-parallel
Strand 3
X
176 178anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
169 170first strand
Strand 2
X
160 166anti-parallel
Strand 3
X
150 155anti-parallel
Strand 4
X
297 300parallel
Strand 5
X
329 330parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
238 241first strand
Strand 2
X
247 250anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il