Analysis of interatomic Contacts of Structural Units in PDB entry:
1RE5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RE5 entry

There are 4 chains in PDB entry 1RE5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3ALA 450
B
 ASN 3ALA 450
C
 ASN 3ALA 450
D
 ASN 3ALA 450
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 96 helices in PDB entry 1RE5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 11Right-handed alpha
Helix 2
2
A
12 19Right-handed alpha
Helix 3
3
A
20 41Right-handed alpha
Helix 4
4
A
46 57Right-handed alpha
Helix 5
5
A
58 62Right-handed 310
Helix 6
6
A
63 75Right-handed alpha
Helix 7
7
A
77 93Right-handed alpha
Helix 8
8
A
94 100Right-handed 310
Helix 9
9
A
105 143Right-handed alpha
Helix 10
10
A
162 188Right-handed alpha
Helix 11
11
A
199 204Right-handed 310
Helix 12
12
A
205 218Right-handed alpha
Helix 13
13
A
230 258Right-handed alpha
Helix 14
14
A
285 308Right-handed alpha
Helix 15
15
A
322 348Right-handed alpha
Helix 16
16
A
351 360Right-handed alpha
Helix 17
17
A
364 366Right-handed 310
Helix 18
18
A
367 379Right-handed alpha
Helix 19
19
A
380 398Right-handed alpha
Helix 20
20
A
401 408Right-handed alpha
Helix 21
21
A
409 416Right-handed alpha
Helix 22
22
A
417 425Right-handed alpha
Helix 23
23
A
426 430Right-handed 310
Helix 24
24
A
433 450Right-handed alpha
Helix 25
25
B
6 11Right-handed alpha
Helix 26
26
B
12 19Right-handed alpha
Helix 27
27
B
20 41Right-handed alpha
Helix 28
28
B
46 57Right-handed alpha
Helix 29
29
B
58 62Right-handed 310
Helix 30
30
B
63 75Right-handed alpha
Helix 31
31
B
77 93Right-handed alpha
Helix 32
32
B
94 100Right-handed 310
Helix 33
33
B
105 143Right-handed alpha
Helix 34
34
B
162 188Right-handed alpha
Helix 35
35
B
199 204Right-handed 310
Helix 36
36
B
205 218Right-handed alpha
Helix 37
37
B
230 258Right-handed alpha
Helix 38
38
B
285 308Right-handed alpha
Helix 39
39
B
322 348Right-handed alpha
Helix 40
40
B
351 360Right-handed alpha
Helix 41
41
B
364 366Right-handed 310
Helix 42
42
B
367 379Right-handed alpha
Helix 43
43
B
380 398Right-handed alpha
Helix 44
44
B
401 408Right-handed alpha
Helix 45
45
B
409 416Right-handed alpha
Helix 46
46
B
417 425Right-handed alpha
Helix 47
47
B
426 430Right-handed 310
Helix 48
48
B
433 450Right-handed alpha
Helix 49
49
C
6 11Right-handed alpha
Helix 50
50
C
12 19Right-handed alpha
Helix 51
51
C
20 41Right-handed alpha
Helix 52
52
C
46 57Right-handed alpha
Helix 53
53
C
58 62Right-handed 310
Helix 54
54
C
63 75Right-handed alpha
Helix 55
55
C
77 93Right-handed alpha
Helix 56
56
C
94 100Right-handed 310
Helix 57
57
C
105 143Right-handed alpha
Helix 58
58
C
162 188Right-handed alpha
Helix 59
59
C
199 204Right-handed 310
Helix 60
60
C
205 217Right-handed alpha
Helix 61
61
C
230 258Right-handed alpha
Helix 62
62
C
285 308Right-handed alpha
Helix 63
63
C
318 348Right-handed alpha
Helix 64
64
C
351 360Right-handed alpha
Helix 65
65
C
364 366Right-handed 310
Helix 66
66
C
367 379Right-handed alpha
Helix 67
67
C
380 398Right-handed alpha
Helix 68
68
C
401 408Right-handed alpha
Helix 69
69
C
409 416Right-handed alpha
Helix 70
70
C
417 425Right-handed alpha
Helix 71
71
C
426 430Right-handed 310
Helix 72
72
C
433 450Right-handed alpha
Helix 73
73
D
6 11Right-handed alpha
Helix 74
74
D
12 19Right-handed alpha
Helix 75
75
D
20 41Right-handed alpha
Helix 76
76
D
46 57Right-handed alpha
Helix 77
77
D
58 62Right-handed 310
Helix 78
78
D
63 75Right-handed alpha
Helix 79
79
D
77 93Right-handed alpha
Helix 80
80
D
94 100Right-handed 310
Helix 81
81
D
105 143Right-handed alpha
Helix 82
82
D
162 188Right-handed alpha
Helix 83
83
D
199 204Right-handed 310
Helix 84
84
D
205 218Right-handed alpha
Helix 85
85
D
230 258Right-handed alpha
Helix 86
86
D
285 308Right-handed alpha
Helix 87
87
D
318 348Right-handed alpha
Helix 88
88
D
351 360Right-handed alpha
Helix 89
89
D
364 366Right-handed 310
Helix 90
90
D
367 379Right-handed alpha
Helix 91
91
D
380 398Right-handed alpha
Helix 92
92
D
401 408Right-handed alpha
Helix 93
93
D
409 416Right-handed alpha
Helix 94
94
D
417 425Right-handed alpha
Helix 95
95
D
426 430Right-handed 310
Helix 96
96
D
433 450Right-handed alpha
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There are 8 sheets in PDB entry 1RE5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 152first strand
Strand 2
A
155 161anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 266first strand
Strand 2
A
349 350anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 152first strand
Strand 2
B
155 161anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 266first strand
Strand 2
B
349 350anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
147 152first strand
Strand 2
C
155 161anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
265 266first strand
Strand 2
C
349 350anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
147 152first strand
Strand 2
D
155 161anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
265 266first strand
Strand 2
D
349 350anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il