Analysis of interatomic Contacts of Structural Units in PDB entry:
1RER

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1RER entry

There are 3 chains in PDB entry 1RER (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 1	ALA 391
B	TYR 1	ALA 391
C	TYR 1	ALA 391

There are 12 helices in PDB entry 1RER. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	113	117	Right-handed 310
Helix 2	2	A	191	195	Right-handed 310
Helix 3	3	A	238	247	Right-handed alpha
Helix 4	4	A	250	254	Right-handed 310
Helix 5	5	B	113	117	Right-handed 310
Helix 6	6	B	191	195	Right-handed 310
Helix 7	7	B	238	247	Right-handed alpha
Helix 8	8	B	250	254	Right-handed 310
Helix 9	9	C	113	117	Right-handed 310
Helix 10	10	C	191	195	Right-handed 310
Helix 11	11	C	238	247	Right-handed alpha
Helix 12	12	C	250	254	Right-handed 310

There are 33 sheets in PDB entry 1RER. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	8	first strand
Strand 2	A	275	280	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	146	first strand
Strand 2	A	126	137	anti-parallel
Strand 3	A	27	40	anti-parallel
Strand 4	A	267	269	anti-parallel
Strand 5	A	260	262	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	146	first strand
Strand 2	A	126	137	anti-parallel
Strand 3	A	27	40	anti-parallel
Strand 4	A	15	19	anti-parallel
Strand 5	A	289	290	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	48	first strand
Strand 2	A	119	122	anti-parallel
Strand 3	A	177	179	anti-parallel
Strand 4	A	184	185	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	54	first strand
Strand 2	A	101	110	anti-parallel
Strand 3	A	59	60	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	54	first strand
Strand 2	A	101	110	anti-parallel
Strand 3	A	77	82	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	156	first strand
Strand 2	A	159	162	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	204	first strand
Strand 2	A	214	215	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	221	first strand
Strand 2	A	233	234	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	306	first strand
Strand 2	A	314	322	anti-parallel
Strand 3	A	351	357	anti-parallel
Strand 4	A	338	339	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	346	first strand
Strand 2	A	326	332	anti-parallel
Strand 3	A	364	369	anti-parallel
Strand 4	A	372	377	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	8	first strand
Strand 2	B	275	280	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	147	first strand
Strand 2	B	126	137	anti-parallel
Strand 3	B	27	40	anti-parallel
Strand 4	B	267	269	anti-parallel
Strand 5	B	260	262	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	147	first strand
Strand 2	B	126	137	anti-parallel
Strand 3	B	27	40	anti-parallel
Strand 4	B	15	19	anti-parallel
Strand 5	B	289	290	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	48	first strand
Strand 2	B	119	122	anti-parallel
Strand 3	B	177	179	anti-parallel
Strand 4	B	184	185	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	54	first strand
Strand 2	B	101	110	anti-parallel
Strand 3	B	59	61	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	54	first strand
Strand 2	B	101	110	anti-parallel
Strand 3	B	77	81	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	156	first strand
Strand 2	B	159	162	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	204	first strand
Strand 2	B	214	215	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	221	first strand
Strand 2	B	233	234	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	306	first strand
Strand 2	B	314	322	anti-parallel
Strand 3	B	351	357	anti-parallel
Strand 4	B	338	339	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	346	first strand
Strand 2	B	326	332	anti-parallel
Strand 3	B	364	369	anti-parallel
Strand 4	B	372	377	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	8	first strand
Strand 2	C	275	280	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	146	first strand
Strand 2	C	126	137	anti-parallel
Strand 3	C	27	40	anti-parallel
Strand 4	C	267	269	anti-parallel
Strand 5	C	260	262	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	146	first strand
Strand 2	C	126	137	anti-parallel
Strand 3	C	27	40	anti-parallel
Strand 4	C	15	19	anti-parallel
Strand 5	C	289	290	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	48	first strand
Strand 2	C	119	122	anti-parallel
Strand 3	C	177	179	anti-parallel
Strand 4	C	184	185	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	54	first strand
Strand 2	C	102	110	anti-parallel
Strand 3	C	59	60	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	54	first strand
Strand 2	C	102	110	anti-parallel
Strand 3	C	77	81	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	156	first strand
Strand 2	C	159	162	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	204	first strand
Strand 2	C	214	215	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	221	first strand
Strand 2	C	233	234	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	306	first strand
Strand 2	C	314	322	anti-parallel
Strand 3	C	351	357	anti-parallel
Strand 4	C	338	339	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	343	346	first strand
Strand 2	C	326	332	anti-parallel
Strand 3	C	364	369	anti-parallel
Strand 4	C	372	377	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1RER

Analysis of interatomic Contacts of Structural Units in PDB entry:
1RER