Analysis of interatomic Contacts of Structural Units in PDB entry:
1RF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RF8 entry

There are 2 chains in PDB entry 1RF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 213
B
 GLY 215ARG 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 1RF8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 30Right-handed alpha
Helix 2
2
A
57 62Right-handed alpha
Helix 3
3
A
71 80Right-handed alpha
Helix 4
4
A
81 81Right-handed 310
Helix 5
5
A
82 86Right-handed 310
Helix 6
6
A
106 112Right-handed alpha
Helix 7
7
A
125 140Right-handed alpha
Helix 8
8
A
171 186Right-handed alpha
Helix 9
9
A
199 203Right-handed alpha
Helix 10
10
B
236 246Right-handed alpha
Helix 11
11
B
252 256Right-handed 310
Helix 12
12
B
268 272Right-handed 310
Helix 13
13
B
279 291Right-handed alpha
Helix 14
14
B
296 303Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 1RF8.

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
43 48anti-parallel
Strand 3
A
92 97anti-parallel
Strand 4
A
151 155anti-parallel
Strand 5
A
161 167anti-parallel
Strand 6
A
113 119anti-parallel
Strand 7
A
195 198anti-parallel
Strand 8
A
211 212anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il