Analysis of interatomic Contacts of Structural Units in PDB entry:
1RFT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RFT entry

There is 1 chain in PDB entry 1RFT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4LEU 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 1RFT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 31Right-handed alpha
Helix 2
2
A
58 72Right-handed alpha
Helix 3
3
A
87 105Right-handed alpha
Helix 4
4
A
129 131Right-handed 310
Helix 5
5
A
132 139Right-handed alpha
Helix 6
6
A
139 144Right-handed alpha
Helix 7
7
A
150 159Right-handed alpha
Helix 8
8
A
164 177Right-handed alpha
Helix 9
9
A
232 248Right-handed alpha
Helix 10
10
A
251 276Right-handed alpha
Helix 11
11
A
293 295Right-handed 310
Helix 12
12
A
296 302Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 1RFT. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 56first strand
Strand 2
A
34 43anti-parallel
Strand 3
A
6 14parallel
Strand 4
A
79 82parallel
Strand 5
A
109 112parallel
Strand 6
A
146 147parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 118first strand
Strand 2
A
125 126anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 188first strand
Strand 2
A
198 208anti-parallel
Strand 3
A
214 224anti-parallel
Strand 4
A
310 311anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il