Analysis of interatomic Contacts of Structural Units in PDB entry:
1RIO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RIO entry

There are 5 chains in PDB entry 1RIO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
U
 C 1 G 27
T
 C 1 G 27
H
 SER 366HIS 426
A
 SER 2HIS 98
B
 SER 2HIS 97
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1RIO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
H
366 371Right-handed alpha
Helix 2
2
H
377 388Right-handed alpha
Helix 3
3
H
397 406Right-handed alpha
Helix 4
4
H
408 424Right-handed alpha
Helix 5
5
A
9 31Right-handed alpha
Helix 6
6
A
33 42Right-handed alpha
Helix 7
7
A
44 53Right-handed alpha
Helix 8
8
A
59 71Right-handed alpha
Helix 9
9
A
73 77Right-handed 310
Helix 10
10
A
78 94Right-handed alpha
Helix 11
11
B
9 31Right-handed alpha
Helix 12
12
B
33 41Right-handed alpha
Helix 13
13
B
44 53Right-handed alpha
Helix 14
14
B
59 71Right-handed alpha
Helix 15
15
B
73 77Right-handed 310
Helix 16
16
B
78 91Right-handed alpha
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There are no sheets in PDB entry 1RIO
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il