Analysis of interatomic Contacts of Structural Units in PDB entry:
1RJ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RJ6 entry

There are 2 chains in PDB entry 1RJ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 3PHE 260
B
 TRP 5PHE 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1RJ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 20Right-handed alpha
Helix 2
2
A
21 25Right-handed 310
Helix 3
3
A
130 136Right-handed alpha
Helix 4
4
A
154 162Right-handed alpha
Helix 5
5
A
163 168Right-handed 310
Helix 6
6
A
180 185Right-handed 310
Helix 7
7
A
220 228Right-handed alpha
Helix 8
8
B
15 20Right-handed alpha
Helix 9
9
B
21 25Right-handed 310
Helix 10
10
B
126 128Right-handed 310
Helix 11
11
B
130 135Right-handed alpha
Helix 12
12
B
154 162Right-handed alpha
Helix 13
13
B
163 168Right-handed 310
Helix 14
14
B
180 185Right-handed 310
Helix 15
15
B
220 228Right-handed alpha
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There are 6 sheets in PDB entry 1RJ6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
108 109parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
257 258parallel
Strand 3
A
191 196anti-parallel
Strand 4
A
207 212anti-parallel
Strand 5
A
141 151parallel
Strand 6
A
116 124anti-parallel
Strand 7
A
88 97anti-parallel
Strand 8
A
66 69anti-parallel
Strand 9
A
57 61anti-parallel
Strand 10
A
173 176anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
78 80anti-parallel
Strand 3
A
88 97anti-parallel
Strand 4
A
116 124anti-parallel
Strand 5
A
141 151anti-parallel
Strand 6
A
216 219parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
108 109parallel
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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 40first strand
Strand 2
B
257 258parallel
Strand 3
B
191 196anti-parallel
Strand 4
B
207 212anti-parallel
Strand 5
B
141 151parallel
Strand 6
B
116 124anti-parallel
Strand 7
B
88 97anti-parallel
Strand 8
B
66 69anti-parallel
Strand 9
B
57 61anti-parallel
Strand 10
B
173 176anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 50first strand
Strand 2
B
78 80anti-parallel
Strand 3
B
88 97anti-parallel
Strand 4
B
116 124anti-parallel
Strand 5
B
141 151anti-parallel
Strand 6
B
216 219parallel
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