Analysis of interatomic Contacts of Structural Units in PDB entry:
1RJ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1RJ8 entry

There are 6 chains in PDB entry 1RJ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 248	PRO 389
B	PRO 248	PRO 389
D	PRO 248	PRO 389
E	PRO 248	PRO 389
F	PRO 248	PRO 389
G	PRO 248	PRO 389

There are 4 helices in PDB entry 1RJ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	263	270	Right-handed 310
Helix 2	2	B	262	266	Right-handed alpha
Helix 3	3	E	262	266	Right-handed alpha
Helix 4	4	G	262	266	Right-handed alpha

There are 18 sheets in PDB entry 1RJ8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	370	372	anti-parallel
Strand 3	A	299	314	anti-parallel
Strand 4	A	379	386	anti-parallel
Strand 5	A	249	254	anti-parallel
Strand 6	A	275	279	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	370	372	anti-parallel
Strand 3	A	299	314	anti-parallel
Strand 4	A	342	354	anti-parallel

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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	286	first strand
Strand 2	A	293	295	anti-parallel
Strand 3	A	359	364	anti-parallel
Strand 4	A	318	324	anti-parallel
Strand 5	A	327	336	anti-parallel
Strand 6	D	342	354	anti-parallel
Strand 7	D	299	314	anti-parallel
Strand 8	D	369	372	anti-parallel
Strand 9	D	259	261	anti-parallel

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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	286	first strand
Strand 2	A	293	295	anti-parallel
Strand 3	A	359	364	anti-parallel
Strand 4	A	318	324	anti-parallel
Strand 5	A	327	336	anti-parallel
Strand 6	D	342	354	anti-parallel
Strand 7	D	299	314	anti-parallel
Strand 8	D	379	386	anti-parallel
Strand 9	D	249	254	anti-parallel
Strand 10	D	275	279	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	261	first strand
Strand 2	B	370	372	anti-parallel
Strand 3	B	299	313	anti-parallel
Strand 4	B	379	386	anti-parallel
Strand 5	B	249	254	anti-parallel
Strand 6	B	275	279	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	261	first strand
Strand 2	B	370	372	anti-parallel
Strand 3	B	299	313	anti-parallel
Strand 4	B	344	354	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	287	first strand
Strand 2	B	292	295	anti-parallel
Strand 3	B	359	364	anti-parallel
Strand 4	B	317	324	anti-parallel
Strand 5	B	327	335	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	284	287	first strand
Strand 2	D	292	295	anti-parallel
Strand 3	D	359	364	anti-parallel
Strand 4	D	317	324	anti-parallel
Strand 5	D	327	335	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	259	261	first strand
Strand 2	E	370	372	anti-parallel
Strand 3	E	299	313	anti-parallel
Strand 4	E	379	386	anti-parallel
Strand 5	E	249	255	anti-parallel
Strand 6	E	274	279	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	259	261	first strand
Strand 2	E	370	372	anti-parallel
Strand 3	E	299	313	anti-parallel
Strand 4	E	344	354	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	284	286	first strand
Strand 2	E	293	295	anti-parallel
Strand 3	E	359	364	anti-parallel
Strand 4	E	317	324	anti-parallel
Strand 5	E	327	335	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	274	279	first strand
Strand 2	F	249	255	anti-parallel
Strand 3	F	379	386	anti-parallel
Strand 4	F	299	314	anti-parallel
Strand 5	F	344	354	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	274	279	first strand
Strand 2	F	249	255	anti-parallel
Strand 3	F	379	386	anti-parallel
Strand 4	F	299	314	anti-parallel
Strand 5	F	369	372	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	269	270	first strand
Strand 2	F	359	364	anti-parallel
Strand 3	F	292	295	anti-parallel
Strand 4	F	284	287	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	269	270	first strand
Strand 2	F	359	364	anti-parallel
Strand 3	F	317	324	anti-parallel
Strand 4	F	327	335	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	259	261	first strand
Strand 2	G	370	372	anti-parallel
Strand 3	G	299	313	anti-parallel
Strand 4	G	379	386	anti-parallel
Strand 5	G	249	255	anti-parallel
Strand 6	G	274	279	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	259	261	first strand
Strand 2	G	370	372	anti-parallel
Strand 3	G	299	313	anti-parallel
Strand 4	G	344	354	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	284	287	first strand
Strand 2	G	292	295	anti-parallel
Strand 3	G	359	364	anti-parallel
Strand 4	G	317	324	anti-parallel
Strand 5	G	327	335	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1RJ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
1RJ8