Analysis of interatomic Contacts of Structural Units in PDB entry:
1RJ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RJ9 entry

There are 2 chains in PDB entry 1RJ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 27GLU 303
B
 GLY 14GLY 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1RJ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 42Right-handed alpha
Helix 2
2
A
45 59Right-handed alpha
Helix 3
3
A
65 73Right-handed alpha
Helix 4
4
A
80 88Right-handed alpha
Helix 5
5
A
114 128Right-handed alpha
Helix 6
6
A
146 157Right-handed alpha
Helix 7
7
A
168 184Right-handed alpha
Helix 8
8
A
199 217Right-handed alpha
Helix 9
9
A
234 248Right-handed alpha
Helix 10
10
A
265 274Right-handed alpha
Helix 11
11
A
293 302Right-handed alpha
Helix 12
12
B
29 41Right-handed alpha
Helix 13
13
B
44 60Right-handed alpha
Helix 14
14
B
69 87Right-handed alpha
Helix 15
15
B
110 124Right-handed alpha
Helix 16
16
B
140 153Right-handed alpha
Helix 17
17
B
164 179Right-handed alpha
Helix 18
18
B
195 210Right-handed alpha
Helix 19
19
B
225 238Right-handed alpha
Helix 20
20
B
254 264Right-handed alpha
Helix 21
21
B
283 293Right-handed alpha
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There are 2 sheets in PDB entry 1RJ9. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
A
133 136parallel
Strand 3
A
187 190parallel
Strand 4
A
104 108parallel
Strand 5
A
223 229parallel
Strand 6
A
251 255parallel
Strand 7
A
277 281parallel
Strand 8
A
289 291anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 158first strand
Strand 2
B
129 133parallel
Strand 3
B
183 187parallel
Strand 4
B
99 104parallel
Strand 5
B
213 219parallel
Strand 6
B
241 245parallel
Strand 7
B
267 271parallel
Strand 8
B
279 281anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il