Analysis of interatomic Contacts of Structural Units in PDB entry:
1RJB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RJB entry

There is 1 chain in PDB entry 1RJB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 572LEU 947
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1RJB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
593 597Right-handed 310
Helix 2
2
A
600 604Right-handed 310
Helix 3
3
A
606 608Right-handed 310
Helix 4
4
A
655 669Right-handed alpha
Helix 5
5
A
698 705Right-handed alpha
Helix 6
6
A
784 805Right-handed alpha
Helix 7
7
A
813 815Right-handed 310
Helix 8
8
A
830 834Right-handed 310
Helix 9
9
A
835 839Right-handed 310
Helix 10
10
A
851 855Right-handed 310
Helix 11
11
A
856 863Right-handed alpha
Helix 12
12
A
866 882Right-handed alpha
Helix 13
13
A
895 904Right-handed alpha
Helix 14
14
A
915 926Right-handed alpha
Helix 15
15
A
929 933Right-handed 310
Helix 16
16
A
935 947Right-handed alpha
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There are 4 sheets in PDB entry 1RJB. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
589 591first strand
Strand 2
A
576 581anti-parallel
Strand 3
A
807 809anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
610 618first strand
Strand 2
A
622 630anti-parallel
Strand 3
A
638 646anti-parallel
Strand 4
A
688 692anti-parallel
Strand 5
A
677 681anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
817 820first strand
Strand 2
A
824 827anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
843 845first strand
Strand 2
A
848 850anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il