Analysis of interatomic Contacts of Structural Units in PDB entry:
1RJM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RJM entry

There are 3 chains in PDB entry 1RJM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 18LEU 285
B
 ASP 17LEU 285
C
 ASP 17ARG 284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 1RJM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 23Right-handed 310
Helix 2
2
A
54 58Right-handed 310
Helix 3
3
A
62 79Right-handed alpha
Helix 4
4
A
135 146Right-handed alpha
Helix 5
5
A
160 169Right-handed alpha
Helix 6
6
A
184 189Right-handed 310
Helix 7
7
A
197 216Right-handed alpha
Helix 8
8
A
220 228Right-handed alpha
Helix 9
9
A
235 237Right-handed 310
Helix 10
10
A
238 252Right-handed alpha
Helix 11
11
A
254 268Right-handed alpha
Helix 12
12
A
270 285Right-handed alpha
Helix 13
13
B
21 23Right-handed 310
Helix 14
14
B
54 58Right-handed 310
Helix 15
15
B
62 78Right-handed alpha
Helix 16
16
B
135 146Right-handed alpha
Helix 17
17
B
160 169Right-handed alpha
Helix 18
18
B
184 189Right-handed 310
Helix 19
19
B
197 205Right-handed alpha
Helix 20
20
B
205 216Right-handed alpha
Helix 21
21
B
221 227Right-handed alpha
Helix 22
22
B
235 237Right-handed 310
Helix 23
23
B
238 252Right-handed alpha
Helix 24
24
B
254 285Right-handed alpha
Helix 25
25
C
21 23Right-handed 310
Helix 26
26
C
54 58Right-handed 310
Helix 27
27
C
62 78Right-handed alpha
Helix 28
28
C
135 146Right-handed alpha
Helix 29
29
C
160 169Right-handed alpha
Helix 30
30
C
197 205Right-handed alpha
Helix 31
31
C
205 216Right-handed alpha
Helix 32
32
C
220 227Right-handed alpha
Helix 33
33
C
235 237Right-handed 310
Helix 34
34
C
238 252Right-handed alpha
Helix 35
35
C
254 268Right-handed alpha
Helix 36
36
C
270 283Right-handed alpha
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There are 6 sheets in PDB entry 1RJM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 27first strand
Strand 2
A
37 42anti-parallel
Strand 3
A
47 52anti-parallel
Strand 4
A
84 89parallel
Strand 5
A
149 154parallel
Strand 6
A
171 175parallel
Strand 7
A
232 234parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 102first strand
Strand 2
A
157 159parallel
Strand 3
A
180 182parallel
Strand 4
A
218 219anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 27first strand
Strand 2
B
37 42anti-parallel
Strand 3
B
47 52anti-parallel
Strand 4
B
84 89parallel
Strand 5
B
149 154parallel
Strand 6
B
171 175parallel
Strand 7
B
232 234parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 102first strand
Strand 2
B
157 159parallel
Strand 3
B
180 182parallel
Strand 4
B
218 220anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 27first strand
Strand 2
C
37 42anti-parallel
Strand 3
C
47 52anti-parallel
Strand 4
C
84 89parallel
Strand 5
C
149 154parallel
Strand 6
C
171 175parallel
Strand 7
C
232 234parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 102first strand
Strand 2
C
157 159parallel
Strand 3
C
180 182parallel
Strand 4
C
218 219anti-parallel
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