Analysis of interatomic Contacts of Structural Units in PDB entry:
1RJN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RJN entry

There are 3 chains in PDB entry 1RJN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 17ARG 296
B
 ALA 14PHE 314
C
 ALA 14LEU 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 1RJN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 23Right-handed 310
Helix 2
2
A
54 58Right-handed 310
Helix 3
3
A
62 78Right-handed alpha
Helix 4
4
A
134 146Right-handed alpha
Helix 5
5
A
160 169Right-handed alpha
Helix 6
6
A
184 189Right-handed 310
Helix 7
7
A
197 216Right-handed alpha
Helix 8
8
A
220 227Right-handed alpha
Helix 9
9
A
235 237Right-handed 310
Helix 10
10
A
238 252Right-handed alpha
Helix 11
11
A
254 268Right-handed alpha
Helix 12
12
A
270 288Right-handed alpha
Helix 13
13
A
290 295Right-handed alpha
Helix 14
14
B
21 23Right-handed 310
Helix 15
15
B
54 58Right-handed 310
Helix 16
16
B
62 78Right-handed alpha
Helix 17
17
B
135 146Right-handed alpha
Helix 18
18
B
160 169Right-handed alpha
Helix 19
19
B
185 189Right-handed 310
Helix 20
20
B
197 205Right-handed alpha
Helix 21
21
B
205 216Right-handed alpha
Helix 22
22
B
220 227Right-handed alpha
Helix 23
23
B
235 237Right-handed 310
Helix 24
24
B
238 252Right-handed alpha
Helix 25
25
B
254 268Right-handed alpha
Helix 26
26
B
270 288Right-handed alpha
Helix 27
27
B
289 294Right-handed alpha
Helix 28
28
B
296 301Right-handed alpha
Helix 29
29
C
14 18Right-handed 310
Helix 30
30
C
21 23Right-handed 310
Helix 31
31
C
54 58Right-handed 310
Helix 32
32
C
62 78Right-handed alpha
Helix 33
33
C
135 146Right-handed alpha
Helix 34
34
C
160 169Right-handed alpha
Helix 35
35
C
184 188Right-handed 310
Helix 36
36
C
197 216Right-handed alpha
Helix 37
37
C
220 227Right-handed alpha
Helix 38
38
C
235 237Right-handed 310
Helix 39
39
C
238 252Right-handed alpha
Helix 40
40
C
254 267Right-handed alpha
Helix 41
41
C
270 285Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 1RJN. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 27first strand
Strand 2
A
37 42anti-parallel
Strand 3
A
47 52anti-parallel
Strand 4
A
84 89parallel
Strand 5
A
149 154parallel
Strand 6
A
171 175parallel
Strand 7
A
232 234parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 102first strand
Strand 2
A
157 159parallel
Strand 3
A
180 182parallel
Strand 4
A
218 219anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 27first strand
Strand 2
B
37 42anti-parallel
Strand 3
B
47 52anti-parallel
Strand 4
B
84 89parallel
Strand 5
B
149 154parallel
Strand 6
B
171 175parallel
Strand 7
B
232 234parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 102first strand
Strand 2
B
157 159parallel
Strand 3
B
180 182parallel
Strand 4
B
218 219anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 27first strand
Strand 2
C
37 42anti-parallel
Strand 3
C
47 52anti-parallel
Strand 4
C
84 89parallel
Strand 5
C
149 154parallel
Strand 6
C
171 175parallel
Strand 7
C
232 234parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 102first strand
Strand 2
C
157 159parallel
Strand 3
C
180 182parallel
Strand 4
C
218 219anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il