Analysis of interatomic Contacts of Structural Units in PDB entry:
1RLI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RLI entry

There are 4 chains in PDB entry 1RLI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2ALA 180
B
 LYS 2ASP 179
C
 LYS 2LEU 175
D
 LYS 2ARG 177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 1RLI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 25Right-handed alpha
Helix 2
2
A
58 68Right-handed alpha
Helix 3
3
A
84 93Right-handed alpha
Helix 4
4
A
93 98Right-handed alpha
Helix 5
5
A
105 112Right-handed alpha
Helix 6
6
A
124 129Right-handed alpha
Helix 7
7
A
129 144Right-handed alpha
Helix 8
8
A
159 163Right-handed 310
Helix 9
9
A
164 174Right-handed alpha
Helix 10
10
B
14 25Right-handed alpha
Helix 11
11
B
58 68Right-handed alpha
Helix 12
12
B
84 93Right-handed alpha
Helix 13
13
B
93 98Right-handed alpha
Helix 14
14
B
105 112Right-handed alpha
Helix 15
15
B
124 129Right-handed alpha
Helix 16
16
B
129 144Right-handed alpha
Helix 17
17
B
159 163Right-handed 310
Helix 18
18
B
164 174Right-handed alpha
Helix 19
19
C
14 24Right-handed alpha
Helix 20
20
C
58 67Right-handed alpha
Helix 21
21
C
84 93Right-handed alpha
Helix 22
22
C
93 98Right-handed alpha
Helix 23
23
C
105 112Right-handed alpha
Helix 24
24
C
124 129Right-handed alpha
Helix 25
25
C
129 144Right-handed alpha
Helix 26
26
C
159 163Right-handed 310
Helix 27
27
C
164 173Right-handed alpha
Helix 28
28
D
14 25Right-handed alpha
Helix 29
29
D
58 68Right-handed alpha
Helix 30
30
D
84 93Right-handed alpha
Helix 31
31
D
93 98Right-handed alpha
Helix 32
32
D
105 112Right-handed alpha
Helix 33
33
D
124 129Right-handed alpha
Helix 34
34
D
129 144Right-handed alpha
Helix 35
35
D
159 163Right-handed 310
Helix 36
36
D
164 173Right-handed alpha
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There are 6 sheets in PDB entry 1RLI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
3 7parallel
Strand 3
A
71 77parallel
Strand 4
A
114 121parallel
Strand 5
A
146 154parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 33first strand
Strand 2
B
3 7parallel
Strand 3
B
71 77parallel
Strand 4
B
114 121parallel
Strand 5
B
146 154parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 33first strand
Strand 2
C
3 7parallel
Strand 3
C
71 77parallel
Strand 4
C
114 121parallel
Strand 5
C
146 154parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
36 37first strand
Strand 2
C
53 54anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
30 33first strand
Strand 2
D
3 7parallel
Strand 3
D
71 77parallel
Strand 4
D
114 121parallel
Strand 5
D
146 154parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
36 38first strand
Strand 2
D
52 54anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il