Analysis of interatomic Contacts of Structural Units in PDB entry:
1RM1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RM1 entry

There are 5 chains in PDB entry 1RM1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 A 1 G 18
E
 C 19 T 36
A
 SER 61MET 240
B
 PRO 4LYS 120
C
 SER 2VAL 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 1RM1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
81 89Right-handed alpha
Helix 2
2
A
128 147Right-handed alpha
Helix 3
3
A
171 179Right-handed alpha
Helix 4
4
A
219 237Right-handed alpha
Helix 5
5
B
8 12Right-handed 310
Helix 6
6
B
13 29Right-handed alpha
Helix 7
7
B
33 55Right-handed alpha
Helix 8
8
C
3 28Right-handed alpha
Helix 9
9
C
31 50Right-handed alpha
Helix 10
10
C
56 61Right-handed 310
Back to top of page

There is 1 sheet ( A) in PDB entry 1RM1.

There are 17 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 186first strand
Strand 2
A
190 197anti-parallel
Strand 3
A
202 206anti-parallel
Strand 4
A
211 217anti-parallel
Strand 5
A
153 165anti-parallel
Strand 6
A
66 75anti-parallel
Strand 7
A
120 126anti-parallel
Strand 8
A
111 116anti-parallel
Strand 9
A
101 106anti-parallel
Strand 10
A
92 94anti-parallel
Strand 11
B
59 72parallel
Strand 12
C
273 284parallel
Strand 13
C
257 268anti-parallel
Strand 14
C
243 254anti-parallel
Strand 15
B
106 117parallel
Strand 16
B
75 86anti-parallel
Strand 17
B
59 72anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il