Analysis of interatomic Contacts of Structural Units in PDB entry:
1RNE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RNE entry

There is 1 chain in PDB entry 1RNE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -1ARG 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 1RNE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
H1
A
47 52Right-handed alpha
Helix 2
H2
A
108 115Right-handed alpha
Helix 3
H3
A
135 144Right-handed alpha
Helix 4
H4
A
224 236Right-handed alpha
Helix 5
H5
A
248 254Right-handed 310
Helix 6
H6
A
302 309Right-handed alpha
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There are 3 sheets in PDB entry 1RNE. Click on sheet of interest to get list of strands forming it: S1, S2, S3,

There are 6 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 189first strand
Strand 2
A
319 325anti-parallel
Strand 3
A
309 315anti-parallel
Strand 4
A
148 157anti-parallel
Strand 5
A
162 168anti-parallel
Strand 6
A
0 9anti-parallel
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There are 7 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 21first strand
Strand 2
A
24 33anti-parallel
Strand 3
A
118 125parallel
Strand 4
A
37 42anti-parallel
Strand 5
A
94 108parallel
Strand 6
A
78 91anti-parallel
Strand 7
A
64 75anti-parallel
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There are 9 strands in S3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 270first strand
Strand 2
A
255 262anti-parallel
Strand 3
A
189 199anti-parallel
Strand 4
A
209 215anti-parallel
Strand 5
A
296 302parallel
Strand 6
A
220 224anti-parallel
Strand 7
A
281 293parallel
Strand 8
A
244 248anti-parallel
Strand 9
A
237 240anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il