Analysis of interatomic Contacts of Structural Units in PDB entry:
1RNL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RNL entry

There is 1 chain in PDB entry 1RNL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5PHE 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1RNL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 28Right-handed alpha
Helix 2
2
A
41 51Right-handed alpha
Helix 3
3
A
67 74Right-handed alpha
Helix 4
4
A
92 100Right-handed alpha
Helix 5
5
A
113 125Right-handed alpha
Helix 6
6
A
132 141Right-handed alpha
Helix 7
7
A
158 168Right-handed alpha
Helix 8
8
A
173 180Right-handed alpha
Helix 9
9
A
184 197Right-handed alpha
Helix 10
10
A
203 213Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1RNL.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 107first strand
Strand 2
A
82 86parallel
Strand 3
A
55 59parallel
Strand 4
A
7 12parallel
Strand 5
A
32 38parallel
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