Analysis of interatomic Contacts of Structural Units in PDB entry:
1RO7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RO7 entry

There are 4 chains in PDB entry 1RO7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ILE 258
B
 MSE 1ILE 258
C
 MSE 1ASN 257
D
 MSE 1ILE 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 1RO7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 15Right-handed 310
Helix 2
2
A
32 36Right-handed 310
Helix 3
3
A
51 53Right-handed 310
Helix 4
4
A
54 68Right-handed alpha
Helix 5
5
A
88 94Right-handed alpha
Helix 6
6
A
94 99Right-handed alpha
Helix 7
7
A
105 110Right-handed alpha
Helix 8
8
A
112 127Right-handed alpha
Helix 9
9
A
131 144Right-handed alpha
Helix 10
10
A
168 175Right-handed alpha
Helix 11
11
A
176 180Right-handed 310
Helix 12
12
A
189 205Right-handed alpha
Helix 13
13
A
215 220Right-handed 310
Helix 14
14
A
247 255Right-handed alpha
Helix 15
15
A
256 258Right-handed 310
Helix 16
16
B
10 16Right-handed 310
Helix 17
17
B
17 21Right-handed 310
Helix 18
18
B
32 36Right-handed 310
Helix 19
19
B
51 53Right-handed 310
Helix 20
20
B
54 68Right-handed alpha
Helix 21
21
B
88 99Right-handed alpha
Helix 22
22
B
105 110Right-handed alpha
Helix 23
23
B
112 127Right-handed alpha
Helix 24
24
B
131 143Right-handed alpha
Helix 25
25
B
168 175Right-handed alpha
Helix 26
26
B
189 204Right-handed alpha
Helix 27
27
B
215 220Right-handed 310
Helix 28
28
B
247 255Right-handed alpha
Helix 29
29
B
256 258Right-handed 310
Helix 30
30
C
10 16Right-handed 310
Helix 31
31
C
17 21Right-handed 310
Helix 32
32
C
32 36Right-handed 310
Helix 33
33
C
51 53Right-handed 310
Helix 34
34
C
54 68Right-handed alpha
Helix 35
35
C
88 99Right-handed alpha
Helix 36
36
C
105 110Right-handed alpha
Helix 37
37
C
112 127Right-handed alpha
Helix 38
38
C
131 143Right-handed alpha
Helix 39
39
C
168 175Right-handed alpha
Helix 40
40
C
189 205Right-handed alpha
Helix 41
41
C
215 220Right-handed 310
Helix 42
42
C
247 255Right-handed alpha
Helix 43
43
D
10 16Right-handed 310
Helix 44
44
D
17 21Right-handed 310
Helix 45
45
D
32 36Right-handed 310
Helix 46
46
D
51 53Right-handed 310
Helix 47
47
D
54 68Right-handed alpha
Helix 48
48
D
88 99Right-handed alpha
Helix 49
49
D
105 110Right-handed alpha
Helix 50
50
D
112 127Right-handed alpha
Helix 51
51
D
131 144Right-handed alpha
Helix 52
52
D
168 175Right-handed alpha
Helix 53
53
D
189 205Right-handed alpha
Helix 54
54
D
215 220Right-handed 310
Helix 55
55
D
247 255Right-handed alpha
Helix 56
56
D
256 258Right-handed 310
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There are 7 sheets in PDB entry 1RO7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 104first strand
Strand 2
A
72 78parallel
Strand 3
A
44 50parallel
Strand 4
A
25 30parallel
Strand 5
A
3 7parallel
Strand 6
A
147 151parallel
Strand 7
A
207 210parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
234 235anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 104first strand
Strand 2
B
72 78parallel
Strand 3
B
44 50parallel
Strand 4
B
25 30parallel
Strand 5
B
3 7parallel
Strand 6
B
147 151parallel
Strand 7
B
207 210parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
103 104first strand
Strand 2
C
72 78parallel
Strand 3
C
44 50parallel
Strand 4
C
25 30parallel
Strand 5
C
3 7parallel
Strand 6
C
147 151parallel
Strand 7
C
207 210parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 39first strand
Strand 2
C
234 235anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
103 104first strand
Strand 2
D
72 78parallel
Strand 3
D
44 50parallel
Strand 4
D
26 30parallel
Strand 5
D
3 7parallel
Strand 6
D
147 151parallel
Strand 7
D
207 210parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
38 39first strand
Strand 2
D
234 235anti-parallel
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