Analysis of interatomic Contacts of Structural Units in PDB entry:
1RP0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RP0 entry

There are 2 chains in PDB entry 1RP0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 7LEU 284
B
 TYR 7LEU 284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1RP0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 38Right-handed alpha
Helix 2
2
A
48 60Right-handed alpha
Helix 3
3
A
95 103Right-handed alpha
Helix 4
4
A
117 131Right-handed alpha
Helix 5
5
A
161 165Right-handed alpha
Helix 6
6
A
195 204Right-handed alpha
Helix 7
7
A
217 229Right-handed alpha
Helix 8
8
A
240 248Right-handed alpha
Helix 9
9
A
256 274Right-handed alpha
Helix 10
10
B
18 38Right-handed alpha
Helix 11
11
B
48 60Right-handed alpha
Helix 12
12
B
95 103Right-handed alpha
Helix 13
13
B
117 131Right-handed alpha
Helix 14
14
B
161 165Right-handed alpha
Helix 15
15
B
195 204Right-handed alpha
Helix 16
16
B
217 229Right-handed alpha
Helix 17
17
B
240 248Right-handed alpha
Helix 18
18
B
256 274Right-handed alpha
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There are 8 sheets in PDB entry 1RP0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 139first strand
Strand 2
A
66 70parallel
Strand 3
A
39 45parallel
Strand 4
A
176 185parallel
Strand 5
A
152 160anti-parallel
Strand 6
A
141 149anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 139first strand
Strand 2
A
66 70parallel
Strand 3
A
39 45parallel
Strand 4
A
176 185parallel
Strand 5
A
236 238parallel
Strand 6
A
230 233anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 92first strand
Strand 2
A
112 115anti-parallel
Strand 3
A
107 108anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
250 251parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 139first strand
Strand 2
B
66 70parallel
Strand 3
B
39 45parallel
Strand 4
B
176 185parallel
Strand 5
B
152 160anti-parallel
Strand 6
B
141 149anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 139first strand
Strand 2
B
66 70parallel
Strand 3
B
39 45parallel
Strand 4
B
176 185parallel
Strand 5
B
236 238parallel
Strand 6
B
230 233anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 92first strand
Strand 2
B
112 115anti-parallel
Strand 3
B
107 108anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 216first strand
Strand 2
B
250 251parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il