Analysis of interatomic Contacts of Structural Units in PDB entry:
1RP1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RP1 entry

There is 1 chain in PDB entry 1RP1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1CYS 449
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 1RP1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
56 60Right-handed 310
Helix 2
2
A
85 95Right-handed alpha
Helix 3
3
A
114 139Right-handed alpha
Helix 4
4
A
152 163Right-handed 310
Helix 5
5
A
248 252Right-handed alpha
Helix 6
6
A
261 275Right-handed alpha
Helix 7
7
A
288 292Right-handed alpha
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There are 4 sheets in PDB entry 1RP1. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
9 12anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
37 42anti-parallel
Strand 3
A
99 105anti-parallel
Strand 4
A
69 74parallel
Strand 5
A
146 151parallel
Strand 6
A
171 175parallel
Strand 7
A
198 202parallel
Strand 8
A
224 228parallel
Strand 9
A
324 327parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 388first strand
Strand 2
A
338 348anti-parallel
Strand 3
A
415 424anti-parallel
Strand 4
A
701 433anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 447first strand
Strand 2
A
395 404anti-parallel
Strand 3
A
351 361anti-parallel
Strand 4
A
369 376anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il