Analysis of interatomic Contacts of Structural Units in PDB entry:
1RPD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RPD entry

There are 6 chains in PDB entry 1RPD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 A 1 G 43
B
 A 1 T 43
C
 SER 1VAL 209
D
 SER 1VAL 209
E
 SER 1VAL 209
F
 SER 1VAL 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1RPD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
C
1 14Right-handed alpha
Helix 2
2
C
16 24Right-handed alpha
Helix 3
3
C
27 36Right-handed alpha
Helix 4
4
C
44 53Right-handed alpha
Helix 5
5
C
55 62Right-handed alpha
Helix 6
6
C
90 95Right-handed alpha
Helix 7
7
C
100 108Right-handed alpha
Helix 8
8
D
1 12Right-handed alpha
Helix 9
9
D
16 24Right-handed alpha
Helix 10
10
D
27 36Right-handed alpha
Helix 11
11
D
44 50Right-handed alpha
Helix 12
12
D
55 62Right-handed alpha
Helix 13
13
D
90 95Right-handed alpha
Helix 14
14
D
100 108Right-handed alpha
Helix 15
15
E
1 14Right-handed alpha
Helix 16
16
E
16 25Right-handed alpha
Helix 17
17
E
27 36Right-handed alpha
Helix 18
18
E
44 52Right-handed alpha
Helix 19
19
E
55 62Right-handed alpha
Helix 20
20
E
90 95Right-handed alpha
Helix 21
21
E
100 108Right-handed alpha
Helix 22
22
F
1 13Right-handed alpha
Helix 23
23
F
16 25Right-handed alpha
Helix 24
24
F
27 36Right-handed alpha
Helix 25
25
F
44 53Right-handed alpha
Helix 26
26
F
55 62Right-handed alpha
Helix 27
27
F
90 95Right-handed alpha
Helix 28
28
F
100 108Right-handed alpha
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There are 10 sheets in PDB entry 1RPD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
71 73first strand
Strand 2
D
71 73anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
84 86first strand
Strand 2
C
167 170parallel
Strand 3
C
176 178anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
141 142first strand
Strand 2
C
157 158anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
141 142first strand
Strand 2
D
157 158anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
168 170first strand
Strand 2
D
176 178anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
71 73first strand
Strand 2
F
71 73anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
84 86first strand
Strand 2
E
167 170parallel
Strand 3
E
176 178anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
141 142first strand
Strand 2
E
157 158anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
141 142first strand
Strand 2
F
157 158anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
168 170first strand
Strand 2
F
176 178anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il